miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32572 5' -51.4 NC_007151.1 + 65168 0.66 0.991724
Target:  5'- -cGUCAaagACGACAUCGGCACaGUUGu -3'
miRNA:   3'- gcUAGUcg-UGUUGUAGCCGUGaCAGC- -5'
32572 5' -51.4 NC_007151.1 + 55081 0.66 0.991724
Target:  5'- uCGAUauaaaAGUuuGCGGCggCGGCGgUGUCGa -3'
miRNA:   3'- -GCUAg----UCG--UGUUGuaGCCGUgACAGC- -5'
32572 5' -51.4 NC_007151.1 + 114443 0.66 0.989189
Target:  5'- -uGUCAuaauuCACGACAUUGGCugUcGUCGg -3'
miRNA:   3'- gcUAGUc----GUGUUGUAGCCGugA-CAGC- -5'
32572 5' -51.4 NC_007151.1 + 127851 0.66 0.989189
Target:  5'- cCGAUCuuuGUAUAcGCAgacaCGGCACUGUUc -3'
miRNA:   3'- -GCUAGu--CGUGU-UGUa---GCCGUGACAGc -5'
32572 5' -51.4 NC_007151.1 + 80381 0.67 0.984299
Target:  5'- aGAagGGCACGuugGCAacgagacCGGUGCUGUCGa -3'
miRNA:   3'- gCUagUCGUGU---UGUa------GCCGUGACAGC- -5'
32572 5' -51.4 NC_007151.1 + 118030 0.67 0.982343
Target:  5'- ----aAGCACGGCAUCGGCAUccaagCGg -3'
miRNA:   3'- gcuagUCGUGUUGUAGCCGUGaca--GC- -5'
32572 5' -51.4 NC_007151.1 + 20667 0.68 0.969728
Target:  5'- ---aCGGCAcCGACGaCGGUAUUGUCGu -3'
miRNA:   3'- gcuaGUCGU-GUUGUaGCCGUGACAGC- -5'
32572 5' -51.4 NC_007151.1 + 65643 0.68 0.966583
Target:  5'- uCGAUUgggugcgcaAGCACGAUAUUuGUGCUGUCGu -3'
miRNA:   3'- -GCUAG---------UCGUGUUGUAGcCGUGACAGC- -5'
32572 5' -51.4 NC_007151.1 + 134306 0.69 0.947387
Target:  5'- -uGUCGGCGCcGCcguaGUCGGCGaUGUCGg -3'
miRNA:   3'- gcUAGUCGUGuUG----UAGCCGUgACAGC- -5'
32572 5' -51.4 NC_007151.1 + 89442 0.7 0.921464
Target:  5'- -aAUCGGCACAaucccucuccagcACAUCGGUAUUGaCGa -3'
miRNA:   3'- gcUAGUCGUGU-------------UGUAGCCGUGACaGC- -5'
32572 5' -51.4 NC_007151.1 + 107579 0.84 0.283391
Target:  5'- uGGUCGGCaacgucgacgACAACGUCGGCGCUGUUa -3'
miRNA:   3'- gCUAGUCG----------UGUUGUAGCCGUGACAGc -5'
32572 5' -51.4 NC_007151.1 + 65794 0.99 0.034008
Target:  5'- uCGA-CAGCACAACAUCGGCACUGUCGu -3'
miRNA:   3'- -GCUaGUCGUGUUGUAGCCGUGACAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.