miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32573 5' -57.4 NC_007151.1 + 95477 0.66 0.879357
Target:  5'- cGugGAuCGGUCGAaaucCCGCaacuuUUCGACAUa -3'
miRNA:   3'- -CugCU-GCCGGCUa---GGCGg----AAGCUGUG- -5'
32573 5' -57.4 NC_007151.1 + 118999 0.67 0.816138
Target:  5'- uACGACcGCCGGaugaacgccuucgUCCGCCUgaggaccuucgUCGGCAUc -3'
miRNA:   3'- cUGCUGcCGGCU-------------AGGCGGA-----------AGCUGUG- -5'
32573 5' -57.4 NC_007151.1 + 77925 0.68 0.769718
Target:  5'- cGACGACGGuuGGUUugaaaugaauUGCCccauagacgagcaaUUCGACGCc -3'
miRNA:   3'- -CUGCUGCCggCUAG----------GCGG--------------AAGCUGUG- -5'
32573 5' -57.4 NC_007151.1 + 54847 0.7 0.645308
Target:  5'- cGACGAUGGCa---CCGCCUUCG-CAg -3'
miRNA:   3'- -CUGCUGCCGgcuaGGCGGAAGCuGUg -5'
32573 5' -57.4 NC_007151.1 + 140591 0.7 0.624121
Target:  5'- gGACGAucgccuaCGGUCGAUCCGCgaUCGAacgauCGCg -3'
miRNA:   3'- -CUGCU-------GCCGGCUAGGCGgaAGCU-----GUG- -5'
32573 5' -57.4 NC_007151.1 + 57858 0.71 0.615045
Target:  5'- -uCGACGGCaCGAucauUCUGUUUUUGACGCg -3'
miRNA:   3'- cuGCUGCCG-GCU----AGGCGGAAGCUGUG- -5'
32573 5' -57.4 NC_007151.1 + 22816 0.73 0.467885
Target:  5'- cGACGACGGUcauugcgCGAucUCCGCCUU-GGCGCc -3'
miRNA:   3'- -CUGCUGCCG-------GCU--AGGCGGAAgCUGUG- -5'
32573 5' -57.4 NC_007151.1 + 78321 1.1 0.001937
Target:  5'- cGACGACGGCCGAUCCGCCUUCGACACa -3'
miRNA:   3'- -CUGCUGCCGGCUAGGCGGAAGCUGUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.