miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 3' -43.9 NC_007151.1 + 68064 0.66 1
Target:  5'- aCGCUUUGAaucgcuUCGCGGCAggCAUUGUg- -3'
miRNA:   3'- aGUGAAAUU------GGCGUUGUa-GUAGCAau -5'
32575 3' -43.9 NC_007151.1 + 49751 0.66 1
Target:  5'- aCGCUUUGAaucgcuUCGCGGCAggCAUUGUg- -3'
miRNA:   3'- aGUGAAAUU------GGCGUUGUa-GUAGCAau -5'
32575 3' -43.9 NC_007151.1 + 77297 0.66 1
Target:  5'- aUCACU---GCCGuCGACGUCAaCGg-- -3'
miRNA:   3'- -AGUGAaauUGGC-GUUGUAGUaGCaau -5'
32575 3' -43.9 NC_007151.1 + 45717 0.67 0.999994
Target:  5'- cUCGCg--AGCCGUcGCggCAUCGUUc -3'
miRNA:   3'- -AGUGaaaUUGGCGuUGuaGUAGCAAu -5'
32575 3' -43.9 NC_007151.1 + 59460 0.67 0.999994
Target:  5'- -aACUauaUAACCGCAACAcgAUCGUUu -3'
miRNA:   3'- agUGAa--AUUGGCGUUGUagUAGCAAu -5'
32575 3' -43.9 NC_007151.1 + 1787 0.68 0.999987
Target:  5'- -gACgUUGGCCGCAACAUCGauaGUg- -3'
miRNA:   3'- agUGaAAUUGGCGUUGUAGUag-CAau -5'
32575 3' -43.9 NC_007151.1 + 95217 0.68 0.999975
Target:  5'- aUAgUUUGAUCGUgucGAUGUCAUCGUUGu -3'
miRNA:   3'- aGUgAAAUUGGCG---UUGUAGUAGCAAU- -5'
32575 3' -43.9 NC_007151.1 + 101199 0.69 0.999915
Target:  5'- -------cACCGCAACAUUGUCGUa- -3'
miRNA:   3'- agugaaauUGGCGUUGUAGUAGCAau -5'
32575 3' -43.9 NC_007151.1 + 48709 0.7 0.999748
Target:  5'- cCGCUUUAG-CGCGACAU--UCGUUAg -3'
miRNA:   3'- aGUGAAAUUgGCGUUGUAguAGCAAU- -5'
32575 3' -43.9 NC_007151.1 + 93532 0.71 0.999345
Target:  5'- aUCAgacUAGCCGaCGACAUUGUCGUUGa -3'
miRNA:   3'- -AGUgaaAUUGGC-GUUGUAGUAGCAAU- -5'
32575 3' -43.9 NC_007151.1 + 35268 0.71 0.998987
Target:  5'- -aGCUUUGACaugaggcuaGUGACGUCAUCGUUu -3'
miRNA:   3'- agUGAAAUUGg--------CGUUGUAGUAGCAAu -5'
32575 3' -43.9 NC_007151.1 + 26730 0.71 0.998987
Target:  5'- cCACcagcuACCGCAACAUUggCGUUAa -3'
miRNA:   3'- aGUGaaau-UGGCGUUGUAGuaGCAAU- -5'
32575 3' -43.9 NC_007151.1 + 12949 0.74 0.992705
Target:  5'- -uGCUaUAGCCGCAGCAU--UCGUUGg -3'
miRNA:   3'- agUGAaAUUGGCGUUGUAguAGCAAU- -5'
32575 3' -43.9 NC_007151.1 + 120396 0.78 0.935937
Target:  5'- uUCGCU---GCCGcCGACGUCAUCGUg- -3'
miRNA:   3'- -AGUGAaauUGGC-GUUGUAGUAGCAau -5'
32575 3' -43.9 NC_007151.1 + 105988 1.09 0.040337
Target:  5'- aUCACUUUAACCGCAACAUCAUCGUUAu -3'
miRNA:   3'- -AGUGAAAUUGGCGUUGUAGUAGCAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.