miRNA display CGI


Results 81 - 99 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 117866 0.66 0.999394
Target:  5'- cGACGAgcuCGACGACacCGACAGGGgcagCGGc -3'
miRNA:   3'- -CUGCU---GCUGCUGcuGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 41559 0.66 0.999512
Target:  5'- -cCGcCGcCGGCGACGGCAAuAUCu- -3'
miRNA:   3'- cuGCuGCuGCUGCUGCUGUUuUAGcu -5'
32575 5' -48.4 NC_007151.1 + 95487 0.66 0.999609
Target:  5'- -uCGGCGGCaGCGugGAUc-GGUCGAa -3'
miRNA:   3'- cuGCUGCUGcUGCugCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 64690 0.66 0.999689
Target:  5'- -uUGGCGcCGGCGACGGCAGcguacUCGu -3'
miRNA:   3'- cuGCUGCuGCUGCUGCUGUUuu---AGCu -5'
32575 5' -48.4 NC_007151.1 + 99049 0.68 0.997217
Target:  5'- uGugGACGAUGACucggaaaaucugGGCGaACGGAGcUCGAg -3'
miRNA:   3'- -CugCUGCUGCUG------------CUGC-UGUUUU-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 37372 0.68 0.997217
Target:  5'- -uCGcCGGUGGCGGCGACAAAgaugucGUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUUU------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 109019 0.69 0.996132
Target:  5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 123270 0.7 0.98625
Target:  5'- uACGuCGACGACGuCGACuucaaucAUCGAg -3'
miRNA:   3'- cUGCuGCUGCUGCuGCUGuuu----UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 55067 0.7 0.987868
Target:  5'- uGCGGCGGCGGCGGUGuCGAcGUCGu -3'
miRNA:   3'- cUGCUGCUGCUGCUGCuGUUuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 77202 0.7 0.989335
Target:  5'- --aGACGAaGACGACGACGAAGa--- -3'
miRNA:   3'- cugCUGCUgCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 94131 0.7 0.99066
Target:  5'- -cCGGCGGucuUGGCGAUGGCGAucUCGAg -3'
miRNA:   3'- cuGCUGCU---GCUGCUGCUGUUuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 77065 0.7 0.99066
Target:  5'- -cCGACaGCGAUGACGACAGcagCGGc -3'
miRNA:   3'- cuGCUGcUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 26231 0.7 0.991852
Target:  5'- -uCGACGAUGuCGAUGACGuuucguUCGAa -3'
miRNA:   3'- cuGCUGCUGCuGCUGCUGUuuu---AGCU- -5'
32575 5' -48.4 NC_007151.1 + 87811 0.69 0.992612
Target:  5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3'
miRNA:   3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 22229 0.69 0.992921
Target:  5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3'
miRNA:   3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 36383 0.69 0.994478
Target:  5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3'
miRNA:   3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 54912 0.69 0.9948
Target:  5'- gGACGuauuCGACGuaaauggguuuaaaGGCGGCGGAAUCGGa -3'
miRNA:   3'- -CUGCu---GCUGCug------------CUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 97047 0.69 0.995471
Target:  5'- cACGcCGAccuCGGCGAUGgGCAGGAUCGGa -3'
miRNA:   3'- cUGCuGCU---GCUGCUGC-UGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 19845 0.66 0.999755
Target:  5'- aACucUGGCGACGGuCGACuauAAUCGAa -3'
miRNA:   3'- cUGcuGCUGCUGCU-GCUGuu-UUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.