miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 54766 0.73 0.955969
Target:  5'- --gGACGACGACGACGuauCAAuccGAUCa- -3'
miRNA:   3'- cugCUGCUGCUGCUGCu--GUU---UUAGcu -5'
32575 5' -48.4 NC_007151.1 + 120224 0.73 0.942983
Target:  5'- cACGAUGACGuCGGCGGCAg---CGAa -3'
miRNA:   3'- cUGCUGCUGCuGCUGCUGUuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 1283 0.74 0.916281
Target:  5'- cGGCGGUGGCGGCGGUGGCGgugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 41483 0.78 0.771685
Target:  5'- uGACGACGAUGAaGACGAUGAAggCGGa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 37375 0.83 0.512763
Target:  5'- cGACGACaguaguuuucgaGACGAUGACGAUAAAGUUGAg -3'
miRNA:   3'- -CUGCUG------------CUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 93979 0.7 0.98625
Target:  5'- -cCGGCGACGA-GACGACAuucuUUGAu -3'
miRNA:   3'- cuGCUGCUGCUgCUGCUGUuuu-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 48947 0.7 0.989335
Target:  5'- cACGAUGGuCGAUGACGACGGccAAUUGu -3'
miRNA:   3'- cUGCUGCU-GCUGCUGCUGUU--UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 94716 0.66 0.999755
Target:  5'- -cCGAUGACGAUuAUGAUGAAggcGUCGAc -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUU---UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 26249 0.66 0.999755
Target:  5'- aGCGGaauuguUGACGuuCGACGACu-GAUCGAa -3'
miRNA:   3'- cUGCU------GCUGCu-GCUGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 138374 0.66 0.999689
Target:  5'- aACGAUGA-GGCG-CGACccAAUCGAa -3'
miRNA:   3'- cUGCUGCUgCUGCuGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 46508 0.66 0.999689
Target:  5'- cACGACaACGGacuCGugGACAucagcGGAUCGAu -3'
miRNA:   3'- cUGCUGcUGCU---GCugCUGU-----UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 43659 0.66 0.999689
Target:  5'- aAUGuCGACGACGGCG-CGuuAGUCGu -3'
miRNA:   3'- cUGCuGCUGCUGCUGCuGUu-UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 82983 0.66 0.999609
Target:  5'- -uCGACGACGAUaGCGAgAAAAU-GAa -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUgUUUUAgCU- -5'
32575 5' -48.4 NC_007151.1 + 140381 0.68 0.996711
Target:  5'- cGACGAuCGucccGCGGCGACGcGCGAucguUCGAu -3'
miRNA:   3'- -CUGCU-GC----UGCUGCUGC-UGUUuu--AGCU- -5'
32575 5' -48.4 NC_007151.1 + 26519 0.69 0.996132
Target:  5'- uGGCGGUGGCGGCGGUGACAAugaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 83406 0.69 0.995471
Target:  5'- aACGAcaaagcCGACGAUGGCGAUAuAAUCu- -3'
miRNA:   3'- cUGCU------GCUGCUGCUGCUGUuUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 7985 0.69 0.994225
Target:  5'- gGAUGACGAUGAUGACacuuuagaaaaauuuGugAAGAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUG---------------CugUUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 54840 0.7 0.99066
Target:  5'- -cCGuCGGCGACGAUGGCAccgccuucgcAGUCGAa -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUu---------UUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.