Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32575 | 5' | -48.4 | NC_007151.1 | + | 119104 | 0.66 | 0.999512 |
Target: 5'- gGGCGAauUGACGACGGauuuaaGACGAuuAUUGAa -3' miRNA: 3'- -CUGCU--GCUGCUGCUg-----CUGUUu-UAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 82983 | 0.66 | 0.999609 |
Target: 5'- -uCGACGACGAUaGCGAgAAAAU-GAa -3' miRNA: 3'- cuGCUGCUGCUGcUGCUgUUUUAgCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 43659 | 0.66 | 0.999689 |
Target: 5'- aAUGuCGACGACGGCG-CGuuAGUCGu -3' miRNA: 3'- cUGCuGCUGCUGCUGCuGUu-UUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 46508 | 0.66 | 0.999689 |
Target: 5'- cACGACaACGGacuCGugGACAucagcGGAUCGAu -3' miRNA: 3'- cUGCUGcUGCU---GCugCUGU-----UUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 138374 | 0.66 | 0.999689 |
Target: 5'- aACGAUGA-GGCG-CGACccAAUCGAa -3' miRNA: 3'- cUGCUGCUgCUGCuGCUGuuUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 26249 | 0.66 | 0.999755 |
Target: 5'- aGCGGaauuguUGACGuuCGACGACu-GAUCGAa -3' miRNA: 3'- cUGCU------GCUGCu-GCUGCUGuuUUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 41193 | 0.67 | 0.999252 |
Target: 5'- ---aGCGACGcCGcCGGCAAAGUCGu -3' miRNA: 3'- cugcUGCUGCuGCuGCUGUUUUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 24937 | 0.67 | 0.998881 |
Target: 5'- -cCGACGACGACGAgGuguGGGUCu- -3' miRNA: 3'- cuGCUGCUGCUGCUgCuguUUUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 134202 | 0.68 | 0.997657 |
Target: 5'- cGACGACauaaGCGucguCGACGAUAAAGgccgCGAa -3' miRNA: 3'- -CUGCUGc---UGCu---GCUGCUGUUUUa---GCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 93979 | 0.7 | 0.98625 |
Target: 5'- -cCGGCGACGA-GACGACAuucuUUGAu -3' miRNA: 3'- cuGCUGCUGCUgCUGCUGUuuu-AGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 48947 | 0.7 | 0.989335 |
Target: 5'- cACGAUGGuCGAUGACGACGGccAAUUGu -3' miRNA: 3'- cUGCUGCU-GCUGCUGCUGUU--UUAGCu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 54840 | 0.7 | 0.99066 |
Target: 5'- -cCGuCGGCGACGAUGGCAccgccuucgcAGUCGAa -3' miRNA: 3'- cuGCuGCUGCUGCUGCUGUu---------UUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 7985 | 0.69 | 0.994225 |
Target: 5'- gGAUGACGAUGAUGACacuuuagaaaaauuuGugAAGAUCa- -3' miRNA: 3'- -CUGCUGCUGCUGCUG---------------CugUUUUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 83406 | 0.69 | 0.995471 |
Target: 5'- aACGAcaaagcCGACGAUGGCGAUAuAAUCu- -3' miRNA: 3'- cUGCU------GCUGCUGCUGCUGUuUUAGcu -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 26519 | 0.69 | 0.996132 |
Target: 5'- uGGCGGUGGCGGCGGUGACAAugaCGAu -3' miRNA: 3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 140381 | 0.68 | 0.996711 |
Target: 5'- cGACGAuCGucccGCGGCGACGcGCGAucguUCGAu -3' miRNA: 3'- -CUGCU-GC----UGCUGCUGC-UGUUuu--AGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 77342 | 0.68 | 0.997217 |
Target: 5'- -cCGACGAUGGuCGACGaACGAGAcUGAu -3' miRNA: 3'- cuGCUGCUGCU-GCUGC-UGUUUUaGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 47820 | 0.68 | 0.997657 |
Target: 5'- cGACGGCucgGACGaucgccucGCGGCGAUucauGAUCGAu -3' miRNA: 3'- -CUGCUG---CUGC--------UGCUGCUGuu--UUAGCU- -5' |
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32575 | 5' | -48.4 | NC_007151.1 | + | 94716 | 0.66 | 0.999755 |
Target: 5'- -cCGAUGACGAUuAUGAUGAAggcGUCGAc -3' miRNA: 3'- cuGCUGCUGCUGcUGCUGUUU---UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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