miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 105954 1.1 0.017363
Target:  5'- aGACGACGACGACGACGACAAAAUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 127018 0.98 0.088865
Target:  5'- uGACGACGACGACGACGACAGugaagauGUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUu------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 16984 0.96 0.11057
Target:  5'- uGACGACGACGACGACGACAGAAaaGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 126212 0.95 0.133544
Target:  5'- cGACGGCGGCGGCGGCGGCGAcGUCGGc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 27559 0.95 0.137165
Target:  5'- aGACGACGACGACGACGACGGuacAAUCGu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUU---UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 89876 0.92 0.178617
Target:  5'- cGGCGACGACGACGACGACAAcaaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 44431 0.89 0.267963
Target:  5'- gGGCGGCGACGACGACGACAaggcaaAAAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU------UUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 103289 0.86 0.372999
Target:  5'- cGACGAUGACGAUGACGACAGAGa--- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 13072 0.84 0.492756
Target:  5'- -uCGACGACGAUGACGACAAAGaaGAa -3'
miRNA:   3'- cuGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 37375 0.83 0.512763
Target:  5'- cGACGACaguaguuuucgaGACGAUGACGAUAAAGUUGAg -3'
miRNA:   3'- -CUGCUG------------CUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 132434 0.82 0.553709
Target:  5'- aGCGACGACGACGACGACca---CGAc -3'
miRNA:   3'- cUGCUGCUGCUGCUGCUGuuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 44668 0.82 0.574552
Target:  5'- cGACGACGACGACGAaaaugaUGGCAAuGUCGu -3'
miRNA:   3'- -CUGCUGCUGCUGCU------GCUGUUuUAGCu -5'
32575 5' -48.4 NC_007151.1 + 36306 0.82 0.595571
Target:  5'- cGGCGGCGAUGACGAUGGCAA---CGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 74026 0.81 0.627293
Target:  5'- aGAUGACGACGAaGACGACGAAGaUGAa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 140541 0.8 0.648475
Target:  5'- gGACGAuCGuCGGCGugGAUGGAGUCGAc -3'
miRNA:   3'- -CUGCU-GCuGCUGCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 93061 0.78 0.752009
Target:  5'- uGCGACGuCGACGACGACGAuggCGc -3'
miRNA:   3'- cUGCUGCuGCUGCUGCUGUUuuaGCu -5'
32575 5' -48.4 NC_007151.1 + 4322 0.78 0.771685
Target:  5'- uGAUGAUGAUGAUGACGAUGAuGUUGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 123070 0.78 0.771685
Target:  5'- uGACGACGACaACGACGACAGcacAGaCGAc -3'
miRNA:   3'- -CUGCUGCUGcUGCUGCUGUU---UUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 41483 0.78 0.771685
Target:  5'- uGACGACGAUGAaGACGAUGAAggCGGa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 77177 0.78 0.775559
Target:  5'- aACGACGAgGACGACGAgAuaagaaaggacacacGAGUCGAu -3'
miRNA:   3'- cUGCUGCUgCUGCUGCUgU---------------UUUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.