miRNA display CGI


Results 1 - 20 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 1235 0.7 0.98625
Target:  5'- gGGCGGCGGUGGCGGUGGCGguggcggugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 1283 0.74 0.916281
Target:  5'- cGGCGGUGGCGGCGGUGGCGgugGAAUCGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU---UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 1877 0.72 0.969926
Target:  5'- cAUGACGAcucugucucCGAUGACGGCAuugccaAAGUCGAg -3'
miRNA:   3'- cUGCUGCU---------GCUGCUGCUGU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 3198 0.72 0.972853
Target:  5'- uGACaGCGAUGACGACGucCAGAuuGUUGAg -3'
miRNA:   3'- -CUGcUGCUGCUGCUGCu-GUUU--UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 4322 0.78 0.771685
Target:  5'- uGAUGAUGAUGAUGACGAUGAuGUUGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 4680 0.72 0.966781
Target:  5'- --gGGCGGCGGCGAUGGCGuccAUCGc -3'
miRNA:   3'- cugCUGCUGCUGCUGCUGUuu-UAGCu -5'
32575 5' -48.4 NC_007151.1 + 7985 0.69 0.994225
Target:  5'- gGAUGACGAUGAUGACacuuuagaaaaauuuGugAAGAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUG---------------CugUUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 13072 0.84 0.492756
Target:  5'- -uCGACGACGAUGACGACAAAGaaGAa -3'
miRNA:   3'- cuGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 16984 0.96 0.11057
Target:  5'- uGACGACGACGACGACGACAGAAaaGAa -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 19845 0.66 0.999755
Target:  5'- aACucUGGCGACGGuCGACuauAAUCGAa -3'
miRNA:   3'- cUGcuGCUGCUGCU-GCUGuu-UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 22229 0.69 0.992921
Target:  5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3'
miRNA:   3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 24937 0.67 0.998881
Target:  5'- -cCGACGACGACGAgGuguGGGUCu- -3'
miRNA:   3'- cuGCUGCUGCUGCUgCuguUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 26231 0.7 0.991852
Target:  5'- -uCGACGAUGuCGAUGACGuuucguUCGAa -3'
miRNA:   3'- cuGCUGCUGCuGCUGCUGUuuu---AGCU- -5'
32575 5' -48.4 NC_007151.1 + 26249 0.66 0.999755
Target:  5'- aGCGGaauuguUGACGuuCGACGACu-GAUCGAa -3'
miRNA:   3'- cUGCU------GCUGCu-GCUGCUGuuUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 26519 0.69 0.996132
Target:  5'- uGGCGGUGGCGGCGGUGACAAugaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 27559 0.95 0.137165
Target:  5'- aGACGACGACGACGACGACGGuacAAUCGu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUU---UUAGCu -5'
32575 5' -48.4 NC_007151.1 + 29187 0.72 0.963411
Target:  5'- aACGGCGGCGACaaaggcaACGACuaucGAGUCGAu -3'
miRNA:   3'- cUGCUGCUGCUGc------UGCUGu---UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 29882 0.76 0.844278
Target:  5'- aGAUGACGuCGACGACGACg----CGAg -3'
miRNA:   3'- -CUGCUGCuGCUGCUGCUGuuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 30609 0.72 0.963411
Target:  5'- uACGuCGGCGACGAUGAgAaugcggAAAUCGAc -3'
miRNA:   3'- cUGCuGCUGCUGCUGCUgU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 33716 0.78 0.781328
Target:  5'- gGACGAUGACGACaAUGACuauGUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGcUGCUGuuuUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.