miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 100523 0.67 0.998881
Target:  5'- -uUGACcauuuuguauGCGugGACGGCAGGAUCGu -3'
miRNA:   3'- cuGCUGc---------UGCugCUGCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 24937 0.67 0.998881
Target:  5'- -cCGACGACGACGAgGuguGGGUCu- -3'
miRNA:   3'- cuGCUGCUGCUGCUgCuguUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 133755 0.68 0.998037
Target:  5'- aGACGGuCGAgaaugggucauCGACGugGACA---UCGAa -3'
miRNA:   3'- -CUGCU-GCU-----------GCUGCugCUGUuuuAGCU- -5'
32575 5' -48.4 NC_007151.1 + 134202 0.68 0.997657
Target:  5'- cGACGACauaaGCGucguCGACGAUAAAGgccgCGAa -3'
miRNA:   3'- -CUGCUGc---UGCu---GCUGCUGUUUUa---GCU- -5'
32575 5' -48.4 NC_007151.1 + 47820 0.68 0.997657
Target:  5'- cGACGGCucgGACGaucgccucGCGGCGAUucauGAUCGAu -3'
miRNA:   3'- -CUGCUG---CUGC--------UGCUGCUGuu--UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 77342 0.68 0.997217
Target:  5'- -cCGACGAUGGuCGACGaACGAGAcUGAu -3'
miRNA:   3'- cuGCUGCUGCU-GCUGC-UGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 48037 0.68 0.997217
Target:  5'- cACGAuCGucccGCGGCGACGcGCGAucGAUCGAu -3'
miRNA:   3'- cUGCU-GC----UGCUGCUGC-UGUU--UUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 99049 0.68 0.997217
Target:  5'- uGugGACGAUGACucggaaaaucugGGCGaACGGAGcUCGAg -3'
miRNA:   3'- -CugCUGCUGCUG------------CUGC-UGUUUU-AGCU- -5'
32575 5' -48.4 NC_007151.1 + 37372 0.68 0.997217
Target:  5'- -uCGcCGGUGGCGGCGACAAAgaugucGUCGAu -3'
miRNA:   3'- cuGCuGCUGCUGCUGCUGUUU------UAGCU- -5'
32575 5' -48.4 NC_007151.1 + 140381 0.68 0.996711
Target:  5'- cGACGAuCGucccGCGGCGACGcGCGAucguUCGAu -3'
miRNA:   3'- -CUGCU-GC----UGCUGCUGC-UGUUuu--AGCU- -5'
32575 5' -48.4 NC_007151.1 + 26519 0.69 0.996132
Target:  5'- uGGCGGUGGCGGCGGUGACAAugaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 109019 0.69 0.996132
Target:  5'- -uCGAUGACGAUGAUGAagauugcuuUAAAAUCGc -3'
miRNA:   3'- cuGCUGCUGCUGCUGCU---------GUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 83406 0.69 0.995471
Target:  5'- aACGAcaaagcCGACGAUGGCGAUAuAAUCu- -3'
miRNA:   3'- cUGCU------GCUGCUGCUGCUGUuUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 97047 0.69 0.995471
Target:  5'- cACGcCGAccuCGGCGAUGgGCAGGAUCGGa -3'
miRNA:   3'- cUGCuGCU---GCUGCUGC-UGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 54912 0.69 0.9948
Target:  5'- gGACGuauuCGACGuaaauggguuuaaaGGCGGCGGAAUCGGa -3'
miRNA:   3'- -CUGCu---GCUGCug------------CUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 36383 0.69 0.994478
Target:  5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3'
miRNA:   3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 7985 0.69 0.994225
Target:  5'- gGAUGACGAUGAUGACacuuuagaaaaauuuGugAAGAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUG---------------CugUUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 22229 0.69 0.992921
Target:  5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3'
miRNA:   3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 87811 0.69 0.992612
Target:  5'- uGACGAaaucauguuucaucUGGCGAUGaACGACGGAggCGAa -3'
miRNA:   3'- -CUGCU--------------GCUGCUGC-UGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 26231 0.7 0.991852
Target:  5'- -uCGACGAUGuCGAUGACGuuucguUCGAa -3'
miRNA:   3'- cuGCUGCUGCuGCUGCUGUuuu---AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.