miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32576 3' -55.9 NC_007151.1 + 56187 0.71 0.692608
Target:  5'- -aCGGUCUauuguAGGGUUUGgCGCGAGCg -3'
miRNA:   3'- ggGCUAGAgu---UCUCGAGCgGCGCUCG- -5'
32576 3' -55.9 NC_007151.1 + 106160 1.12 0.002023
Target:  5'- uCCCGAUCUCAAGAGCUCGCCGCGAGCc -3'
miRNA:   3'- -GGGCUAGAGUUCUCGAGCGGCGCUCG- -5'
32576 3' -55.9 NC_007151.1 + 91715 0.68 0.823628
Target:  5'- aCCG--CUCGAuGAGCgucUGCCGCGAGg -3'
miRNA:   3'- gGGCuaGAGUU-CUCGa--GCGGCGCUCg -5'
32576 3' -55.9 NC_007151.1 + 105954 0.66 0.922098
Target:  5'- uUCGAggcaCUCGuuguaguguuggAGcauGGCUCGCgGCGAGCu -3'
miRNA:   3'- gGGCUa---GAGU------------UC---UCGAGCGgCGCUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.