miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32576 5' -47 NC_007151.1 + 118788 0.66 0.999836
Target:  5'- gACGCU-CAuCGGGaUGCCgaCGAAGGUCc -3'
miRNA:   3'- -UGUGAuGUuGCUC-ACGGa-GCUUUUAG- -5'
32576 5' -47 NC_007151.1 + 4645 0.67 0.999562
Target:  5'- gGCGCUugaucauCAGCGGGUG-CUUGAucAUCa -3'
miRNA:   3'- -UGUGAu------GUUGCUCACgGAGCUuuUAG- -5'
32576 5' -47 NC_007151.1 + 106287 0.67 0.999562
Target:  5'- aGCGCUACAuuugucggcgAUGAGuUGCCUagcAAAGUCg -3'
miRNA:   3'- -UGUGAUGU----------UGCUC-ACGGAgc-UUUUAG- -5'
32576 5' -47 NC_007151.1 + 121241 0.67 0.99945
Target:  5'- uCGCU----CGAGUGCCUCGGuucaacugaAGAUCa -3'
miRNA:   3'- uGUGAuguuGCUCACGGAGCU---------UUUAG- -5'
32576 5' -47 NC_007151.1 + 116609 0.67 0.999315
Target:  5'- -aACUACAAUGAaaaauguagacgGUGCCUgGAcaacAAAUCg -3'
miRNA:   3'- ugUGAUGUUGCU------------CACGGAgCU----UUUAG- -5'
32576 5' -47 NC_007151.1 + 84538 0.68 0.998933
Target:  5'- uACACUACAAuCGGGUacgacacGUCUCuuAGAUCg -3'
miRNA:   3'- -UGUGAUGUU-GCUCA-------CGGAGcuUUUAG- -5'
32576 5' -47 NC_007151.1 + 84336 0.68 0.998721
Target:  5'- -aACUACAACGAccGUGCC-CGAu---- -3'
miRNA:   3'- ugUGAUGUUGCU--CACGGaGCUuuuag -5'
32576 5' -47 NC_007151.1 + 37854 0.68 0.998721
Target:  5'- -uGCUACGcgGCGuuUGCCUCGAcuucGUCg -3'
miRNA:   3'- ugUGAUGU--UGCucACGGAGCUuu--UAG- -5'
32576 5' -47 NC_007151.1 + 85947 0.68 0.998352
Target:  5'- uACACgaucuagACGACaagacuuguguuuuGAGUGUCUCGAugAAAUCg -3'
miRNA:   3'- -UGUGa------UGUUG--------------CUCACGGAGCU--UUUAG- -5'
32576 5' -47 NC_007151.1 + 106125 1.11 0.016388
Target:  5'- aACACUACAACGAGUGCCUCGAAAAUCu -3'
miRNA:   3'- -UGUGAUGUUGCUCACGGAGCUUUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.