miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32578 3' -57.2 NC_007151.1 + 91894 0.66 0.858717
Target:  5'- cCUGCcuccGCuGGagcgaCGACGcccgCCCGAUGAUCGu -3'
miRNA:   3'- -GACG----CG-CCg----GCUGUa---GGGCUACUAGC- -5'
32578 3' -57.2 NC_007151.1 + 61574 0.66 0.887383
Target:  5'- aUGCuGCGGCuccCGGgAUUCCuGUGAUCGa -3'
miRNA:   3'- gACG-CGCCG---GCUgUAGGGcUACUAGC- -5'
32578 3' -57.2 NC_007151.1 + 64644 0.66 0.878437
Target:  5'- aCUGUGCGGCauuggCGGCAacaccggcuggcucUCCUucUGAUCGg -3'
miRNA:   3'- -GACGCGCCG-----GCUGU--------------AGGGcuACUAGC- -5'
32578 3' -57.2 NC_007151.1 + 107678 0.67 0.843171
Target:  5'- --uCGCGGCCGuuGUCggcgaCGAUGAUUGa -3'
miRNA:   3'- gacGCGCCGGCugUAGg----GCUACUAGC- -5'
32578 3' -57.2 NC_007151.1 + 64590 0.72 0.556946
Target:  5'- aUGCGCGGCCGGugccgauuacCGUUCCGAUccuuUCGg -3'
miRNA:   3'- gACGCGCCGGCU----------GUAGGGCUAcu--AGC- -5'
32578 3' -57.2 NC_007151.1 + 118917 1.08 0.002869
Target:  5'- uCUGCGCGGCCGACAUCCCGAUGAUCGu -3'
miRNA:   3'- -GACGCGCCGGCUGUAGGGCUACUAGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.