miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32578 5' -49.5 NC_007151.1 + 16692 0.67 0.995337
Target:  5'- cAGCAAUaUUCU--GGAUUUCGGCaACGa -3'
miRNA:   3'- -UCGUUA-GAGAuaUCUGAAGCCGgUGC- -5'
32578 5' -49.5 NC_007151.1 + 142244 0.67 0.992678
Target:  5'- cGGCAAUCUUU---GACagCGGCgGCGa -3'
miRNA:   3'- -UCGUUAGAGAuauCUGaaGCCGgUGC- -5'
32578 5' -49.5 NC_007151.1 + 31649 0.67 0.991562
Target:  5'- cAGCAAUCUCgauuGAUgUUCGGUCAgGu -3'
miRNA:   3'- -UCGUUAGAGauauCUG-AAGCCGGUgC- -5'
32578 5' -49.5 NC_007151.1 + 51376 0.69 0.974504
Target:  5'- --uGGUCUUUGUcGAUUUCGGCgGCGg -3'
miRNA:   3'- ucgUUAGAGAUAuCUGAAGCCGgUGC- -5'
32578 5' -49.5 NC_007151.1 + 43879 0.71 0.940365
Target:  5'- cAGacauGUCUCUGgAGACUUUGGCCGa- -3'
miRNA:   3'- -UCgu--UAGAGAUaUCUGAAGCCGGUgc -5'
32578 5' -49.5 NC_007151.1 + 62059 0.71 0.929996
Target:  5'- cGCAuguUCUCUAUGGAUUUauuccuauaugCGGCgGCGa -3'
miRNA:   3'- uCGUu--AGAGAUAUCUGAA-----------GCCGgUGC- -5'
32578 5' -49.5 NC_007151.1 + 118880 1.1 0.00932
Target:  5'- aAGCAAUCUCUAUAGACUUCGGCCACGa -3'
miRNA:   3'- -UCGUUAGAGAUAUCUGAAGCCGGUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.