miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32579 3' -53.4 NC_007151.1 + 56400 0.66 0.977322
Target:  5'- cCU-CGACCUUuuGACGAACGUuauCUACc -3'
miRNA:   3'- -GAuGCUGGAGguCUGCUUGCG---GAUGc -5'
32579 3' -53.4 NC_007151.1 + 77327 0.66 0.97482
Target:  5'- aCUACauaaucGCCUCC-GACGAugGUCgACGa -3'
miRNA:   3'- -GAUGc-----UGGAGGuCUGCUugCGGaUGC- -5'
32579 3' -53.4 NC_007151.1 + 114515 0.66 0.974559
Target:  5'- gUACGacGCCUCCauuucggAGAUGAaGCGCCauUACGa -3'
miRNA:   3'- gAUGC--UGGAGG-------UCUGCU-UGCGG--AUGC- -5'
32579 3' -53.4 NC_007151.1 + 91751 0.67 0.962788
Target:  5'- uCUACGacgccuGCCUCCgcuAGAgcGGCGCCUGCu -3'
miRNA:   3'- -GAUGC------UGGAGG---UCUgcUUGCGGAUGc -5'
32579 3' -53.4 NC_007151.1 + 47812 0.67 0.942308
Target:  5'- -aACGugCUCgacggcuCGGACGAuCGCCUcGCGg -3'
miRNA:   3'- gaUGCugGAG-------GUCUGCUuGCGGA-UGC- -5'
32579 3' -53.4 NC_007151.1 + 81362 0.68 0.938058
Target:  5'- ---aGaACCUCCAGACacuACGCCcACGa -3'
miRNA:   3'- gaugC-UGGAGGUCUGcu-UGCGGaUGC- -5'
32579 3' -53.4 NC_007151.1 + 37677 0.68 0.938058
Target:  5'- -gACGAagUCgAGGCaAACGCCUGCGu -3'
miRNA:   3'- gaUGCUggAGgUCUGcUUGCGGAUGC- -5'
32579 3' -53.4 NC_007151.1 + 91707 0.7 0.847189
Target:  5'- uUGCGACUaCCGcucGAUGAGCGUCUGCc -3'
miRNA:   3'- gAUGCUGGaGGU---CUGCUUGCGGAUGc -5'
32579 3' -53.4 NC_007151.1 + 118997 0.74 0.657769
Target:  5'- ---nGACCgCCGGAUGAACGCCUuCGu -3'
miRNA:   3'- gaugCUGGaGGUCUGCUUGCGGAuGC- -5'
32579 3' -53.4 NC_007151.1 + 140608 0.75 0.625817
Target:  5'- -aACGugCUCgacggcuCGGACGAuCGCCUACGg -3'
miRNA:   3'- gaUGCugGAG-------GUCUGCUuGCGGAUGC- -5'
32579 3' -53.4 NC_007151.1 + 118938 0.94 0.053429
Target:  5'- uCUGCGACCUCCGGACGAuCGUCUGCGc -3'
miRNA:   3'- -GAUGCUGGAGGUCUGCUuGCGGAUGC- -5'
32579 3' -53.4 NC_007151.1 + 119022 1.1 0.005053
Target:  5'- cCUACGACCUCCAGACGAACGCCUACGa -3'
miRNA:   3'- -GAUGCUGGAGGUCUGCUUGCGGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.