miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32581 5' -52.1 NC_007151.1 + 126312 1.11 0.004863
Target:  5'- gCGCUAUGAACGAUCUCUGCCACCGUCa -3'
miRNA:   3'- -GCGAUACUUGCUAGAGACGGUGGCAG- -5'
32581 5' -52.1 NC_007151.1 + 66608 0.75 0.653655
Target:  5'- aCGCUAUGAGCGGUCUUUugaaCGCCGg- -3'
miRNA:   3'- -GCGAUACUUGCUAGAGAcg--GUGGCag -5'
32581 5' -52.1 NC_007151.1 + 95511 0.71 0.855483
Target:  5'- uCGUUuUGAGCGca-UCcGCCACCGUCg -3'
miRNA:   3'- -GCGAuACUUGCuagAGaCGGUGGCAG- -5'
32581 5' -52.1 NC_007151.1 + 70634 0.69 0.934606
Target:  5'- uCGCUucaauCGAUCguuugCUGCCAUCGUUa -3'
miRNA:   3'- -GCGAuacuuGCUAGa----GACGGUGGCAG- -5'
32581 5' -52.1 NC_007151.1 + 133707 0.68 0.944315
Target:  5'- aCGCcaucgGUGAACGAauacugUCUCUGUCGuuGUa -3'
miRNA:   3'- -GCGa----UACUUGCU------AGAGACGGUggCAg -5'
32581 5' -52.1 NC_007151.1 + 50133 0.67 0.96759
Target:  5'- gGCUAucacguccUGGGCGAUgUCUGCCAUgCGa- -3'
miRNA:   3'- gCGAU--------ACUUGCUAgAGACGGUG-GCag -5'
32581 5' -52.1 NC_007151.1 + 97163 0.66 0.984857
Target:  5'- gGUUAUaGACGAgUCUCUGCCAaguauUCGUUc -3'
miRNA:   3'- gCGAUAcUUGCU-AGAGACGGU-----GGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.