miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32584 3' -44.5 NC_007151.1 + 136820 1.1 0.034518
Target:  5'- aGUCGUUUAUAAACCAAAUCCGCGCAGc -3'
miRNA:   3'- -CAGCAAAUAUUUGGUUUAGGCGCGUC- -5'
32584 3' -44.5 NC_007151.1 + 102740 0.78 0.926259
Target:  5'- aUCGcUUUGUAGAugUCGAAUCCGCGCAu -3'
miRNA:   3'- cAGC-AAAUAUUU--GGUUUAGGCGCGUc -5'
32584 3' -44.5 NC_007151.1 + 71000 0.74 0.990336
Target:  5'- aGUCGUUcaac-ACUAGAUCCGCGCu- -3'
miRNA:   3'- -CAGCAAauauuUGGUUUAGGCGCGuc -5'
32584 3' -44.5 NC_007151.1 + 70915 0.71 0.998974
Target:  5'- --aGUggGUGAGCCGAAUCCGUGa-- -3'
miRNA:   3'- cagCAaaUAUUUGGUUUAGGCGCguc -5'
32584 3' -44.5 NC_007151.1 + 71087 0.67 0.999981
Target:  5'- uGUCGUUcgacacgaaUAUAGAuCCAguguuguucucGAUCCGUGCAc -3'
miRNA:   3'- -CAGCAA---------AUAUUU-GGU-----------UUAGGCGCGUc -5'
32584 3' -44.5 NC_007151.1 + 88323 0.67 0.999986
Target:  5'- -cUGUUUAUAAAuCCuuAUCgGCGCGa -3'
miRNA:   3'- caGCAAAUAUUU-GGuuUAGgCGCGUc -5'
32584 3' -44.5 NC_007151.1 + 73653 0.67 0.999986
Target:  5'- aUCGUUUcuauacgggcgAUAGAUCAAgacauAUCCGUGUAGu -3'
miRNA:   3'- cAGCAAA-----------UAUUUGGUU-----UAGGCGCGUC- -5'
32584 3' -44.5 NC_007151.1 + 147377 0.67 0.99999
Target:  5'- cUCGUUguu--ACCuaGAAUCUGUGCAGu -3'
miRNA:   3'- cAGCAAauauuUGG--UUUAGGCGCGUC- -5'
32584 3' -44.5 NC_007151.1 + 76835 0.66 0.999997
Target:  5'- uUCGUU--UGAAUUAcAUCCGgGCAGu -3'
miRNA:   3'- cAGCAAauAUUUGGUuUAGGCgCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.