miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32585 5' -53.9 NC_007151.1 + 48036 0.67 0.952729
Target:  5'- aCGAUCgucccgcggcgacgCGCGAUCGAuCGAucaugaaUCGcCGCGa -3'
miRNA:   3'- aGCUAG--------------GCGCUAGCUuGCU-------AGC-GCGC- -5'
32585 5' -53.9 NC_007151.1 + 101070 0.67 0.945604
Target:  5'- aCGAUuuGguguguaugguaaCGAgggaugUGAGCGAUCGCGCa -3'
miRNA:   3'- aGCUAggC-------------GCUa-----GCUUGCUAGCGCGc -5'
32585 5' -53.9 NC_007151.1 + 42921 0.67 0.954309
Target:  5'- cUCGuacauUCUGCGGUUGAugGGUgGUGUc -3'
miRNA:   3'- -AGCu----AGGCGCUAGCUugCUAgCGCGc -5'
32585 5' -53.9 NC_007151.1 + 121053 0.67 0.958102
Target:  5'- aCGGUCUGCGAUCGucGACGAaauaucuuuuauUCaaGUGCa -3'
miRNA:   3'- aGCUAGGCGCUAGC--UUGCU------------AG--CGCGc -5'
32585 5' -53.9 NC_007151.1 + 71121 0.68 0.928291
Target:  5'- cUCGAUCCGUGcacuacgacacacAUCGAuUGGcaacaacuguuggcuUCGCGCGa -3'
miRNA:   3'- -AGCUAGGCGC-------------UAGCUuGCU---------------AGCGCGC- -5'
32585 5' -53.9 NC_007151.1 + 45887 0.68 0.931389
Target:  5'- aCGAUgCCGCGA-CGGcucGCGAguggcaaaaucguUCGCGUGa -3'
miRNA:   3'- aGCUA-GGCGCUaGCU---UGCU-------------AGCGCGC- -5'
32585 5' -53.9 NC_007151.1 + 140555 0.7 0.846535
Target:  5'- -aGAUCCGgGGUCGu-CGAUUGaCGCa -3'
miRNA:   3'- agCUAGGCgCUAGCuuGCUAGC-GCGc -5'
32585 5' -53.9 NC_007151.1 + 47736 0.7 0.838472
Target:  5'- aUCGAUUCG-GGUCacGCGcgCGCGCGa -3'
miRNA:   3'- -AGCUAGGCgCUAGcuUGCuaGCGCGC- -5'
32585 5' -53.9 NC_007151.1 + 140683 0.7 0.838472
Target:  5'- aUCGAUUCG-GGUCacGCGcgCGCGCGa -3'
miRNA:   3'- -AGCUAGGCgCUAGcuUGCuaGCGCGC- -5'
32585 5' -53.9 NC_007151.1 + 118941 0.7 0.86954
Target:  5'- gCG-UCUGCGAccucCGGACGAUCgucuGCGCGg -3'
miRNA:   3'- aGCuAGGCGCUa---GCUUGCUAG----CGCGC- -5'
32585 5' -53.9 NC_007151.1 + 47864 0.7 0.846535
Target:  5'- -aGAUCCGgGGUCGu-CGAUUGaCGCa -3'
miRNA:   3'- agCUAGGCgCUAGCuuGCUAGC-GCGc -5'
32585 5' -53.9 NC_007151.1 + 140383 0.71 0.810586
Target:  5'- aCGAUCgucccgcggcgacgCGCGAUCGuuCGAUCGCGg- -3'
miRNA:   3'- aGCUAG--------------GCGCUAGCuuGCUAGCGCgc -5'
32585 5' -53.9 NC_007151.1 + 47845 0.79 0.399402
Target:  5'- gCGAUUCaUGAUCGAuCGAUCGCGCGu -3'
miRNA:   3'- aGCUAGGcGCUAGCUuGCUAGCGCGC- -5'
32585 5' -53.9 NC_007151.1 + 140576 1.09 0.005563
Target:  5'- gUCGAUCCGCGAUCGAACGAUCGCGCGu -3'
miRNA:   3'- -AGCUAGGCGCUAGCUUGCUAGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.