Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32585 | 5' | -53.9 | NC_007151.1 | + | 47845 | 0.79 | 0.399402 |
Target: 5'- gCGAUUCaUGAUCGAuCGAUCGCGCGu -3' miRNA: 3'- aGCUAGGcGCUAGCUuGCUAGCGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 140383 | 0.71 | 0.810586 |
Target: 5'- aCGAUCgucccgcggcgacgCGCGAUCGuuCGAUCGCGg- -3' miRNA: 3'- aGCUAG--------------GCGCUAGCuuGCUAGCGCgc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 47736 | 0.7 | 0.838472 |
Target: 5'- aUCGAUUCG-GGUCacGCGcgCGCGCGa -3' miRNA: 3'- -AGCUAGGCgCUAGcuUGCuaGCGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 140555 | 0.7 | 0.846535 |
Target: 5'- -aGAUCCGgGGUCGu-CGAUUGaCGCa -3' miRNA: 3'- agCUAGGCgCUAGCuuGCUAGC-GCGc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 71121 | 0.68 | 0.928291 |
Target: 5'- cUCGAUCCGUGcacuacgacacacAUCGAuUGGcaacaacuguuggcuUCGCGCGa -3' miRNA: 3'- -AGCUAGGCGC-------------UAGCUuGCU---------------AGCGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 140683 | 0.7 | 0.838472 |
Target: 5'- aUCGAUUCG-GGUCacGCGcgCGCGCGa -3' miRNA: 3'- -AGCUAGGCgCUAGcuUGCuaGCGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 47864 | 0.7 | 0.846535 |
Target: 5'- -aGAUCCGgGGUCGu-CGAUUGaCGCa -3' miRNA: 3'- agCUAGGCgCUAGCuuGCUAGC-GCGc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 118941 | 0.7 | 0.86954 |
Target: 5'- gCG-UCUGCGAccucCGGACGAUCgucuGCGCGg -3' miRNA: 3'- aGCuAGGCGCUa---GCUUGCUAG----CGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 45887 | 0.68 | 0.931389 |
Target: 5'- aCGAUgCCGCGA-CGGcucGCGAguggcaaaaucguUCGCGUGa -3' miRNA: 3'- aGCUA-GGCGCUaGCU---UGCU-------------AGCGCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 101070 | 0.67 | 0.945604 |
Target: 5'- aCGAUuuGguguguaugguaaCGAgggaugUGAGCGAUCGCGCa -3' miRNA: 3'- aGCUAggC-------------GCUa-----GCUUGCUAGCGCGc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 48036 | 0.67 | 0.952729 |
Target: 5'- aCGAUCgucccgcggcgacgCGCGAUCGAuCGAucaugaaUCGcCGCGa -3' miRNA: 3'- aGCUAG--------------GCGCUAGCUuGCU-------AGC-GCGC- -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 42921 | 0.67 | 0.954309 |
Target: 5'- cUCGuacauUCUGCGGUUGAugGGUgGUGUc -3' miRNA: 3'- -AGCu----AGGCGCUAGCUugCUAgCGCGc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 121053 | 0.67 | 0.958102 |
Target: 5'- aCGGUCUGCGAUCGucGACGAaauaucuuuuauUCaaGUGCa -3' miRNA: 3'- aGCUAGGCGCUAGC--UUGCU------------AG--CGCGc -5' |
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32585 | 5' | -53.9 | NC_007151.1 | + | 140576 | 1.09 | 0.005563 |
Target: 5'- gUCGAUCCGCGAUCGAACGAUCGCGCGu -3' miRNA: 3'- -AGCUAGGCGCUAGCUUGCUAGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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