miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32586 5' -48.7 NC_007151.1 + 47722 1.14 0.008566
Target:  5'- aCCUCUCGAUCGUUAUCGAUUCGGGUCa -3'
miRNA:   3'- -GGAGAGCUAGCAAUAGCUAAGCCCAG- -5'
32586 5' -48.7 NC_007151.1 + 51370 0.68 0.996788
Target:  5'- gUCUCUUGGUCuUUGUCGAUuUCGGcGg- -3'
miRNA:   3'- -GGAGAGCUAGcAAUAGCUA-AGCC-Cag -5'
32586 5' -48.7 NC_007151.1 + 105996 0.67 0.998679
Target:  5'- gCUCUUGAgaUCGggAUCGAUuccgUCGaGUCg -3'
miRNA:   3'- gGAGAGCU--AGCaaUAGCUA----AGCcCAG- -5'
32586 5' -48.7 NC_007151.1 + 62142 0.67 0.998679
Target:  5'- gCUCUucagCGGUCGU-----GUUCGGGUCg -3'
miRNA:   3'- gGAGA----GCUAGCAauagcUAAGCCCAG- -5'
32586 5' -48.7 NC_007151.1 + 109492 0.67 0.998776
Target:  5'- uCCUCUUGAUCuGUcgcaaaucgauucgAUCGAaUCGGGa- -3'
miRNA:   3'- -GGAGAGCUAG-CAa-------------UAGCUaAGCCCag -5'
32586 5' -48.7 NC_007151.1 + 495 0.66 0.999526
Target:  5'- uUUCUUGGUCGUUAaCGAUg-GGGa- -3'
miRNA:   3'- gGAGAGCUAGCAAUaGCUAagCCCag -5'
32586 5' -48.7 NC_007151.1 + 73826 0.72 0.952554
Target:  5'- uUCUgUCGG-CGaUUGUCGA-UCGGGUCg -3'
miRNA:   3'- -GGAgAGCUaGC-AAUAGCUaAGCCCAG- -5'
32586 5' -48.7 NC_007151.1 + 140697 1.14 0.008566
Target:  5'- aCCUCUCGAUCGUUAUCGAUUCGGGUCa -3'
miRNA:   3'- -GGAGAGCUAGCAAUAGCUAAGCCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.