miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32587 5' -55.8 NC_007151.1 + 117877 0.66 0.903693
Target:  5'- gUGAUCAuggucgacgagcUCGACgacaccgacagGGGCaGCGGCGGUu -3'
miRNA:   3'- aACUAGU------------AGUUG-----------CCCGcCGCCGCUAc -5'
32587 5' -55.8 NC_007151.1 + 55080 0.67 0.853584
Target:  5'- -cGAUauaaaaGUUuGCGG-CGGCGGCGGUGu -3'
miRNA:   3'- aaCUAg-----UAGuUGCCcGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 36315 0.67 0.845555
Target:  5'- --------aAACGGcaGCGGCGGCGAUGa -3'
miRNA:   3'- aacuaguagUUGCC--CGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 1313 0.68 0.802587
Target:  5'- -aGA-CAUCGGCGGcaaagaaGGUGGCGGUGg -3'
miRNA:   3'- aaCUaGUAGUUGCCcg-----CCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 1225 0.7 0.695793
Target:  5'- uUUGAaaCAUgGGC-GGCGGUGGCGGUGg -3'
miRNA:   3'- -AACUa-GUAgUUGcCCGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 127058 0.7 0.685567
Target:  5'- gUGggUAUCGGCGgaGGCGGCGGCa--- -3'
miRNA:   3'- aACuaGUAGUUGC--CCGCCGCCGcuac -5'
32587 5' -55.8 NC_007151.1 + 26501 0.7 0.685567
Target:  5'- -cGAcggCAUCggU-GGCGGUGGCGGUGg -3'
miRNA:   3'- aaCUa--GUAGuuGcCCGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 4703 0.75 0.435606
Target:  5'- ----gCAUcCAACGuGGUGGCGGCGGUGg -3'
miRNA:   3'- aacuaGUA-GUUGC-CCGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 126206 0.76 0.38309
Target:  5'- -cGAUCA-CGACGgcGGCGGCGGCGGc- -3'
miRNA:   3'- aaCUAGUaGUUGC--CCGCCGCCGCUac -5'
32587 5' -55.8 NC_007151.1 + 1276 0.78 0.298333
Target:  5'- gUGG-CAUCGGC-GGUGGCGGCGGUGg -3'
miRNA:   3'- aACUaGUAGUUGcCCGCCGCCGCUAC- -5'
32587 5' -55.8 NC_007151.1 + 4667 1.06 0.003788
Target:  5'- cUUGAUCAUCAACGGGCGGCGGCGAUGg -3'
miRNA:   3'- -AACUAGUAGUUGCCCGCCGCCGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.