Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32587 | 5' | -55.8 | NC_007151.1 | + | 117877 | 0.66 | 0.903693 |
Target: 5'- gUGAUCAuggucgacgagcUCGACgacaccgacagGGGCaGCGGCGGUu -3' miRNA: 3'- aACUAGU------------AGUUG-----------CCCGcCGCCGCUAc -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 55080 | 0.67 | 0.853584 |
Target: 5'- -cGAUauaaaaGUUuGCGG-CGGCGGCGGUGu -3' miRNA: 3'- aaCUAg-----UAGuUGCCcGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 36315 | 0.67 | 0.845555 |
Target: 5'- --------aAACGGcaGCGGCGGCGAUGa -3' miRNA: 3'- aacuaguagUUGCC--CGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 1313 | 0.68 | 0.802587 |
Target: 5'- -aGA-CAUCGGCGGcaaagaaGGUGGCGGUGg -3' miRNA: 3'- aaCUaGUAGUUGCCcg-----CCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 1225 | 0.7 | 0.695793 |
Target: 5'- uUUGAaaCAUgGGC-GGCGGUGGCGGUGg -3' miRNA: 3'- -AACUa-GUAgUUGcCCGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 127058 | 0.7 | 0.685567 |
Target: 5'- gUGggUAUCGGCGgaGGCGGCGGCa--- -3' miRNA: 3'- aACuaGUAGUUGC--CCGCCGCCGcuac -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 26501 | 0.7 | 0.685567 |
Target: 5'- -cGAcggCAUCggU-GGCGGUGGCGGUGg -3' miRNA: 3'- aaCUa--GUAGuuGcCCGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 4703 | 0.75 | 0.435606 |
Target: 5'- ----gCAUcCAACGuGGUGGCGGCGGUGg -3' miRNA: 3'- aacuaGUA-GUUGC-CCGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 126206 | 0.76 | 0.38309 |
Target: 5'- -cGAUCA-CGACGgcGGCGGCGGCGGc- -3' miRNA: 3'- aaCUAGUaGUUGC--CCGCCGCCGCUac -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 1276 | 0.78 | 0.298333 |
Target: 5'- gUGG-CAUCGGC-GGUGGCGGCGGUGg -3' miRNA: 3'- aACUaGUAGUUGcCCGCCGCCGCUAC- -5' |
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32587 | 5' | -55.8 | NC_007151.1 | + | 4667 | 1.06 | 0.003788 |
Target: 5'- cUUGAUCAUCAACGGGCGGCGGCGAUGg -3' miRNA: 3'- -AACUAGUAGUUGCCCGCCGCCGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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