miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32590 5' -47.1 NC_007151.1 + 109550 1.1 0.01653
Target:  5'- gCUGUACAAAAGCCCUCGACACAAUCAa -3'
miRNA:   3'- -GACAUGUUUUCGGGAGCUGUGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 62519 0.74 0.935042
Target:  5'- uCUGUugAgagauuuacgcGAAGCCCUCGACcgucucuCAAUCGa -3'
miRNA:   3'- -GACAugU-----------UUUCGGGAGCUGu------GUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 139611 0.73 0.965567
Target:  5'- uUGUuuGAucucGGCCUUCGGCAUAAUCAu -3'
miRNA:   3'- gACAugUUu---UCGGGAGCUGUGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 109690 0.73 0.95406
Target:  5'- -cGUACAGAGGUCC-CGAUuCGAUCGa -3'
miRNA:   3'- gaCAUGUUUUCGGGaGCUGuGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 147394 0.72 0.968906
Target:  5'- uCUGUGCAGucguuGCCgUCGGCauguaaGCAAUCAa -3'
miRNA:   3'- -GACAUGUUuu---CGGgAGCUG------UGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 7582 0.7 0.993017
Target:  5'- -gGUAUAAAAGCgCUCaaauCGCAGUCAg -3'
miRNA:   3'- gaCAUGUUUUCGgGAGcu--GUGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 82265 0.7 0.993017
Target:  5'- uUGUAUAGAuuAGCCauuaaaUUGAUACAAUCGa -3'
miRNA:   3'- gACAUGUUU--UCGGg-----AGCUGUGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 31884 0.68 0.998486
Target:  5'- uCUGUugAAaucGAGUCCUCgcGACACGAaCAc -3'
miRNA:   3'- -GACAugUU---UUCGGGAG--CUGUGUUaGU- -5'
32590 5' -47.1 NC_007151.1 + 148714 0.67 0.999335
Target:  5'- aUGUGuuGAGGCCuCUCGACgACAAUa- -3'
miRNA:   3'- gACAUguUUUCGG-GAGCUG-UGUUAgu -5'
32590 5' -47.1 NC_007151.1 + 31775 0.66 0.999841
Target:  5'- -gGUACAAAGGCgaUUUCGAC-CGAUUAc -3'
miRNA:   3'- gaCAUGUUUUCG--GGAGCUGuGUUAGU- -5'
32590 5' -47.1 NC_007151.1 + 68276 0.66 0.999737
Target:  5'- -cGUGCAGgcGUCUUCGAguUGAUCAa -3'
miRNA:   3'- gaCAUGUUuuCGGGAGCUguGUUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.