miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32593 5' -52.6 NC_007151.1 + 31785 0.66 0.987099
Target:  5'- uGCGAUCGUUgGuacaaagGCGauuUCGACCg -3'
miRNA:   3'- gCGCUAGCAAgCuag----CGCcu-AGCUGG- -5'
32593 5' -52.6 NC_007151.1 + 11317 0.67 0.977321
Target:  5'- --aGAUU--UCGGUUGUGGGUCGACa -3'
miRNA:   3'- gcgCUAGcaAGCUAGCGCCUAGCUGg -5'
32593 5' -52.6 NC_007151.1 + 65409 0.67 0.977321
Target:  5'- gGCGAaCGUUUGAUCGUa-GUUGACUu -3'
miRNA:   3'- gCGCUaGCAAGCUAGCGccUAGCUGG- -5'
32593 5' -52.6 NC_007151.1 + 73819 0.67 0.974842
Target:  5'- gGCGAUUG-UCGAUCG-GG-UCGAUUc -3'
miRNA:   3'- gCGCUAGCaAGCUAGCgCCuAGCUGG- -5'
32593 5' -52.6 NC_007151.1 + 1684 0.68 0.969302
Target:  5'- aGCGGcugUUGgcgUCGA-CGCGGGUC-ACCa -3'
miRNA:   3'- gCGCU---AGCa--AGCUaGCGCCUAGcUGG- -5'
32593 5' -52.6 NC_007151.1 + 99677 0.68 0.966228
Target:  5'- aGCGaAUCGUUagGAUUGCGGAaccUGACUc -3'
miRNA:   3'- gCGC-UAGCAAg-CUAGCGCCUa--GCUGG- -5'
32593 5' -52.6 NC_007151.1 + 30867 0.69 0.947595
Target:  5'- aGCaGcUCGUUUGAUCGaauuuaggcgaCGGGUCGACa -3'
miRNA:   3'- gCG-CuAGCAAGCUAGC-----------GCCUAGCUGg -5'
32593 5' -52.6 NC_007151.1 + 101291 0.69 0.933661
Target:  5'- -aUGAUCGUUCGAcccgaugcgauUCGC--AUCGACCa -3'
miRNA:   3'- gcGCUAGCAAGCU-----------AGCGccUAGCUGG- -5'
32593 5' -52.6 NC_007151.1 + 78142 0.7 0.90569
Target:  5'- --aGAUgugUCGAagGCGGAUCGGCCg -3'
miRNA:   3'- gcgCUAgcaAGCUagCGCCUAGCUGG- -5'
32593 5' -52.6 NC_007151.1 + 48017 0.7 0.90569
Target:  5'- gCGCGAUCGaUCGAUCaugaaucgccGCGaggcGAUCGuCCg -3'
miRNA:   3'- -GCGCUAGCaAGCUAG----------CGC----CUAGCuGG- -5'
32593 5' -52.6 NC_007151.1 + 62655 0.71 0.864485
Target:  5'- uCGCGAUCGcgUUCGAcgUCGCcuacguugGGAUUGGCg -3'
miRNA:   3'- -GCGCUAGC--AAGCU--AGCG--------CCUAGCUGg -5'
32593 5' -52.6 NC_007151.1 + 47852 0.72 0.849028
Target:  5'- -aUGAUCGaUCGAUCGCGcGUCG-CCg -3'
miRNA:   3'- gcGCUAGCaAGCUAGCGCcUAGCuGG- -5'
32593 5' -52.6 NC_007151.1 + 140570 0.8 0.418222
Target:  5'- cCGCGAUCGaaCGAUCGCGcGUCG-CCg -3'
miRNA:   3'- -GCGCUAGCaaGCUAGCGCcUAGCuGG- -5'
32593 5' -52.6 NC_007151.1 + 140402 1.13 0.004302
Target:  5'- gCGCGAUCGUUCGAUCGCGGAUCGACCg -3'
miRNA:   3'- -GCGCUAGCAAGCUAGCGCCUAGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.