Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32593 | 5' | -52.6 | NC_007151.1 | + | 31785 | 0.66 | 0.987099 |
Target: 5'- uGCGAUCGUUgGuacaaagGCGauuUCGACCg -3' miRNA: 3'- gCGCUAGCAAgCuag----CGCcu-AGCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 65409 | 0.67 | 0.977321 |
Target: 5'- gGCGAaCGUUUGAUCGUa-GUUGACUu -3' miRNA: 3'- gCGCUaGCAAGCUAGCGccUAGCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 11317 | 0.67 | 0.977321 |
Target: 5'- --aGAUU--UCGGUUGUGGGUCGACa -3' miRNA: 3'- gcgCUAGcaAGCUAGCGCCUAGCUGg -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 73819 | 0.67 | 0.974842 |
Target: 5'- gGCGAUUG-UCGAUCG-GG-UCGAUUc -3' miRNA: 3'- gCGCUAGCaAGCUAGCgCCuAGCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 1684 | 0.68 | 0.969302 |
Target: 5'- aGCGGcugUUGgcgUCGA-CGCGGGUC-ACCa -3' miRNA: 3'- gCGCU---AGCa--AGCUaGCGCCUAGcUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 99677 | 0.68 | 0.966228 |
Target: 5'- aGCGaAUCGUUagGAUUGCGGAaccUGACUc -3' miRNA: 3'- gCGC-UAGCAAg-CUAGCGCCUa--GCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 30867 | 0.69 | 0.947595 |
Target: 5'- aGCaGcUCGUUUGAUCGaauuuaggcgaCGGGUCGACa -3' miRNA: 3'- gCG-CuAGCAAGCUAGC-----------GCCUAGCUGg -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 101291 | 0.69 | 0.933661 |
Target: 5'- -aUGAUCGUUCGAcccgaugcgauUCGC--AUCGACCa -3' miRNA: 3'- gcGCUAGCAAGCU-----------AGCGccUAGCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 78142 | 0.7 | 0.90569 |
Target: 5'- --aGAUgugUCGAagGCGGAUCGGCCg -3' miRNA: 3'- gcgCUAgcaAGCUagCGCCUAGCUGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 48017 | 0.7 | 0.90569 |
Target: 5'- gCGCGAUCGaUCGAUCaugaaucgccGCGaggcGAUCGuCCg -3' miRNA: 3'- -GCGCUAGCaAGCUAG----------CGC----CUAGCuGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 62655 | 0.71 | 0.864485 |
Target: 5'- uCGCGAUCGcgUUCGAcgUCGCcuacguugGGAUUGGCg -3' miRNA: 3'- -GCGCUAGC--AAGCU--AGCG--------CCUAGCUGg -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 47852 | 0.72 | 0.849028 |
Target: 5'- -aUGAUCGaUCGAUCGCGcGUCG-CCg -3' miRNA: 3'- gcGCUAGCaAGCUAGCGCcUAGCuGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 140570 | 0.8 | 0.418222 |
Target: 5'- cCGCGAUCGaaCGAUCGCGcGUCG-CCg -3' miRNA: 3'- -GCGCUAGCaaGCUAGCGCcUAGCuGG- -5' |
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32593 | 5' | -52.6 | NC_007151.1 | + | 140402 | 1.13 | 0.004302 |
Target: 5'- gCGCGAUCGUUCGAUCGCGGAUCGACCg -3' miRNA: 3'- -GCGCUAGCAAGCUAGCGCCUAGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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