miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32760 3' -51.1 NC_007291.1 + 7605 0.66 0.887194
Target:  5'- --cCGUGCCAGCugGCuCGUACUUAccACCg -3'
miRNA:   3'- cgaGUAUGGUCG--CG-GUAUGAGU--UGGg -5'
32760 3' -51.1 NC_007291.1 + 42361 0.66 0.854258
Target:  5'- aGCUaCAUcACCAGCGCC----UUGACCUg -3'
miRNA:   3'- -CGA-GUA-UGGUCGCGGuaugAGUUGGG- -5'
32760 3' -51.1 NC_007291.1 + 6638 0.66 0.854258
Target:  5'- -----gGCCuuGCGCCGUACUCuucGCCa -3'
miRNA:   3'- cgaguaUGGu-CGCGGUAUGAGu--UGGg -5'
32760 3' -51.1 NC_007291.1 + 24128 0.67 0.826871
Target:  5'- uGCUCGUacucaaGCCAG-GCCAagucCUCuuCCCa -3'
miRNA:   3'- -CGAGUA------UGGUCgCGGUau--GAGuuGGG- -5'
32760 3' -51.1 NC_007291.1 + 20539 0.68 0.776927
Target:  5'- cUUCAgugACCAGCGCCGguaucuucacUACaUCAaagucgauACCCa -3'
miRNA:   3'- cGAGUa--UGGUCGCGGU----------AUG-AGU--------UGGG- -5'
32760 3' -51.1 NC_007291.1 + 7150 0.68 0.755721
Target:  5'- uGCUCGUaGCCAuUGCCAaaGCUaaCAACCCu -3'
miRNA:   3'- -CGAGUA-UGGUcGCGGUa-UGA--GUUGGG- -5'
32760 3' -51.1 NC_007291.1 + 26879 0.69 0.732865
Target:  5'- uGCUUGUGaggucgcUCAGCGCCAUuaaUAACCCa -3'
miRNA:   3'- -CGAGUAU-------GGUCGCGGUAugaGUUGGG- -5'
32760 3' -51.1 NC_007291.1 + 16891 0.7 0.654992
Target:  5'- aGCUC--ACCAGCaacGCCAgACUUGGCCUu -3'
miRNA:   3'- -CGAGuaUGGUCG---CGGUaUGAGUUGGG- -5'
32760 3' -51.1 NC_007291.1 + 8770 0.7 0.64811
Target:  5'- aGCUUGUcGCCAGUGCCAauuaucagucuuauuUGCUCAAUa- -3'
miRNA:   3'- -CGAGUA-UGGUCGCGGU---------------AUGAGUUGgg -5'
32760 3' -51.1 NC_007291.1 + 4481 0.71 0.632036
Target:  5'- ---aGUGCCGGCGCgAaACUCAGCUg -3'
miRNA:   3'- cgagUAUGGUCGCGgUaUGAGUUGGg -5'
32760 3' -51.1 NC_007291.1 + 1744 1.14 0.001007
Target:  5'- uGCUCAUACCAGCGCCAUACUCAACCCc -3'
miRNA:   3'- -CGAGUAUGGUCGCGGUAUGAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.