Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 256031 | 0.66 | 0.999233 |
Target: 5'- cAAAUCUCgGCCCCGAgaUUgaggagGCGGUGc -3' miRNA: 3'- -UUUGGAGgCGGGGCUggAAa-----UGUUAC- -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 18370 | 0.66 | 0.999233 |
Target: 5'- --uCCaCCGCCCgGACCggUACAu-- -3' miRNA: 3'- uuuGGaGGCGGGgCUGGaaAUGUuac -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 368764 | 0.66 | 0.998397 |
Target: 5'- --uCCUCCGCCgCCG-CCUggaACAAg- -3' miRNA: 3'- uuuGGAGGCGG-GGCuGGAaa-UGUUac -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 133966 | 0.67 | 0.99722 |
Target: 5'- aAGACCgcucUUGCCCUGACCcuucuuugaauuucUUUGCAAUGc -3' miRNA: 3'- -UUUGGa---GGCGGGGCUGG--------------AAAUGUUAC- -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 272050 | 0.69 | 0.984577 |
Target: 5'- -cACCUCCGCCaCCG-CCggUGCGu-- -3' miRNA: 3'- uuUGGAGGCGG-GGCuGGaaAUGUuac -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 402124 | 0.7 | 0.982758 |
Target: 5'- uGGACCaUgUGCCCCGACCcgUGCAu-- -3' miRNA: 3'- -UUUGG-AgGCGGGGCUGGaaAUGUuac -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 61608 | 0.72 | 0.954804 |
Target: 5'- -cACCUCCGCCUUcGCCUUUGCc--- -3' miRNA: 3'- uuUGGAGGCGGGGcUGGAAAUGuuac -5' |
|||||||
32765 | 3' | -52.3 | NC_007346.1 | + | 51200 | 1.06 | 0.024608 |
Target: 5'- uAAACCUCCGCCCCGACCUUUACAAUGu -3' miRNA: 3'- -UUUGGAGGCGGGGCUGGAAAUGUUAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home