miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32765 3' -52.3 NC_007346.1 + 256031 0.66 0.999233
Target:  5'- cAAAUCUCgGCCCCGAgaUUgaggagGCGGUGc -3'
miRNA:   3'- -UUUGGAGgCGGGGCUggAAa-----UGUUAC- -5'
32765 3' -52.3 NC_007346.1 + 18370 0.66 0.999233
Target:  5'- --uCCaCCGCCCgGACCggUACAu-- -3'
miRNA:   3'- uuuGGaGGCGGGgCUGGaaAUGUuac -5'
32765 3' -52.3 NC_007346.1 + 368764 0.66 0.998397
Target:  5'- --uCCUCCGCCgCCG-CCUggaACAAg- -3'
miRNA:   3'- uuuGGAGGCGG-GGCuGGAaa-UGUUac -5'
32765 3' -52.3 NC_007346.1 + 133966 0.67 0.99722
Target:  5'- aAGACCgcucUUGCCCUGACCcuucuuugaauuucUUUGCAAUGc -3'
miRNA:   3'- -UUUGGa---GGCGGGGCUGG--------------AAAUGUUAC- -5'
32765 3' -52.3 NC_007346.1 + 272050 0.69 0.984577
Target:  5'- -cACCUCCGCCaCCG-CCggUGCGu-- -3'
miRNA:   3'- uuUGGAGGCGG-GGCuGGaaAUGUuac -5'
32765 3' -52.3 NC_007346.1 + 402124 0.7 0.982758
Target:  5'- uGGACCaUgUGCCCCGACCcgUGCAu-- -3'
miRNA:   3'- -UUUGG-AgGCGGGGCUGGaaAUGUuac -5'
32765 3' -52.3 NC_007346.1 + 61608 0.72 0.954804
Target:  5'- -cACCUCCGCCUUcGCCUUUGCc--- -3'
miRNA:   3'- uuUGGAGGCGGGGcUGGAAAUGuuac -5'
32765 3' -52.3 NC_007346.1 + 51200 1.06 0.024608
Target:  5'- uAAACCUCCGCCCCGACCUUUACAAUGu -3'
miRNA:   3'- -UUUGGAGGCGGGGCUGGAAAUGUUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.