miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32766 3' -50.8 NC_007346.1 + 373961 0.66 0.999879
Target:  5'- ---uUGCCGUGUUCUuauuuaUGGUGUACAg -3'
miRNA:   3'- gcguACGGUAUAAGGca----ACCACGUGU- -5'
32766 3' -50.8 NC_007346.1 + 73131 0.67 0.999617
Target:  5'- gGUAUGCCGcAUUaaCUGgaGGUGCAUAu -3'
miRNA:   3'- gCGUACGGUaUAA--GGCaaCCACGUGU- -5'
32766 3' -50.8 NC_007346.1 + 257693 0.67 0.999617
Target:  5'- cCGCGuuuUGCCAUAUUCCGguaugccGGU-CACc -3'
miRNA:   3'- -GCGU---ACGGUAUAAGGCaa-----CCAcGUGu -5'
32766 3' -50.8 NC_007346.1 + 256308 0.67 0.999527
Target:  5'- aCGgGUGCCAac-UCCagUGGUGCGCc -3'
miRNA:   3'- -GCgUACGGUauaAGGcaACCACGUGu -5'
32766 3' -50.8 NC_007346.1 + 78964 0.67 0.999527
Target:  5'- gGCAUG-CAUAUUCCGUU--UGCAUu -3'
miRNA:   3'- gCGUACgGUAUAAGGCAAccACGUGu -5'
32766 3' -50.8 NC_007346.1 + 338307 0.68 0.99903
Target:  5'- aGCAUGCaGUAUUCCGUgcgccagguaacuauUGGaucguUGCGCu -3'
miRNA:   3'- gCGUACGgUAUAAGGCA---------------ACC-----ACGUGu -5'
32766 3' -50.8 NC_007346.1 + 74703 0.68 0.998742
Target:  5'- aCGCAUGCacUGUUCCGaucccGG-GCACAa -3'
miRNA:   3'- -GCGUACGguAUAAGGCaa---CCaCGUGU- -5'
32766 3' -50.8 NC_007346.1 + 123377 0.72 0.971651
Target:  5'- uGCAauaaaaUGcCCAUAUUCUGUUGGUGgACc -3'
miRNA:   3'- gCGU------AC-GGUAUAAGGCAACCACgUGu -5'
32766 3' -50.8 NC_007346.1 + 370783 0.72 0.971651
Target:  5'- uCGCGUGaCCGUccUUCUGUUGGcGCGCGu -3'
miRNA:   3'- -GCGUAC-GGUAu-AAGGCAACCaCGUGU- -5'
32766 3' -50.8 NC_007346.1 + 274066 0.73 0.965739
Target:  5'- uGCGU-CCGUAUUUCGacgGGUGCGCGa -3'
miRNA:   3'- gCGUAcGGUAUAAGGCaa-CCACGUGU- -5'
32766 3' -50.8 NC_007346.1 + 78061 1.09 0.021326
Target:  5'- gCGCAUGCCAUAUUCCGUUGGUGCACAc -3'
miRNA:   3'- -GCGUACGGUAUAAGGCAACCACGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.