miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32767 3' -53.8 NC_007346.1 + 125001 0.66 0.997653
Target:  5'- aGCGUUagUUGuAGUGCACGUGCaaacCCAa -3'
miRNA:   3'- -CGCAGggAAC-UCACGUGCAUGca--GGU- -5'
32767 3' -53.8 NC_007346.1 + 392340 0.68 0.991246
Target:  5'- uGCGUCCCaUGgggcgcgcugcucuGGUGUAUGUGCcuUCCAc -3'
miRNA:   3'- -CGCAGGGaAC--------------UCACGUGCAUGc-AGGU- -5'
32767 3' -53.8 NC_007346.1 + 244905 0.68 0.987879
Target:  5'- uGCGUgCUUUGcaagaaAGcgaGCGCGUGCGUCCu -3'
miRNA:   3'- -CGCAgGGAAC------UCa--CGUGCAUGCAGGu -5'
32767 3' -53.8 NC_007346.1 + 242125 0.68 0.987879
Target:  5'- ---aCCCUUGAGauUGUGCGUAauaGUCCGg -3'
miRNA:   3'- cgcaGGGAACUC--ACGUGCAUg--CAGGU- -5'
32767 3' -53.8 NC_007346.1 + 236060 0.69 0.976887
Target:  5'- aUGUUCCUuacacaucucUGcGUGCACG-ACGUCCAu -3'
miRNA:   3'- cGCAGGGA----------ACuCACGUGCaUGCAGGU- -5'
32767 3' -53.8 NC_007346.1 + 86907 1.1 0.011358
Target:  5'- uGCGUCCCUUGAGUGCACGUACGUCCAc -3'
miRNA:   3'- -CGCAGGGAACUCACGUGCAUGCAGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.