Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 29464 | 0.66 | 0.999338 |
|
Target: 5'- gCGUugGuuGUcGCCAAGUACA-UGCg -3' miRNA: 3'- -GCAugCucCGaCGGUUCAUGUuGCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 243704 | 0.66 | 0.999196 |
|
Target: 5'- --cAUGGGGUUGCCAug-AUGGCGCa -3' miRNA: 3'- gcaUGCUCCGACGGUucaUGUUGCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 201178 | 0.66 | 0.999029 |
|
Target: 5'- gGUACcggggacgGAGGCgGCUGAGUugGAgGCg -3' miRNA: 3'- gCAUG--------CUCCGaCGGUUCAugUUgCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 390435 | 0.66 | 0.999029 |
|
Target: 5'- -cUGCGAGGCcGCCAAGcucgguUGCGA-GCUc -3' miRNA: 3'- gcAUGCUCCGaCGGUUC------AUGUUgCGA- -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 250815 | 0.66 | 0.998833 |
|
Target: 5'- --cAUGA-GCUgaacGCCAAGUACAAUGCg -3' miRNA: 3'- gcaUGCUcCGA----CGGUUCAUGUUGCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 130117 | 0.66 | 0.998605 |
|
Target: 5'- ---cCGGGGUU-UCAAGUACAACGCc -3' miRNA: 3'- gcauGCUCCGAcGGUUCAUGUUGCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 177835 | 0.68 | 0.994275 |
|
Target: 5'- aGUGCGGGuGCggGCgCAGGUGCGGCuGUa -3' miRNA: 3'- gCAUGCUC-CGa-CG-GUUCAUGUUG-CGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 393015 | 0.69 | 0.990314 |
|
Target: 5'- aCGaa-GAGGUgGCCAAGUGgAACGCc -3' miRNA: 3'- -GCaugCUCCGaCGGUUCAUgUUGCGa -5' |
|||||||
| 32768 | 3' | -52.5 | NC_007346.1 | + | 87388 | 1.09 | 0.016784 |
|
Target: 5'- uCGUACGAGGCUGCCAAGUACAACGCUg -3' miRNA: 3'- -GCAUGCUCCGACGGUUCAUGUUGCGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home