miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32769 5' -56.6 NC_007346.1 + 188158 0.66 0.981734
Target:  5'- gACAugGugG-CgGCUGCG-AGGgUGGCg -3'
miRNA:   3'- -UGUugCugCaG-CGACGCgUCCgACUG- -5'
32769 5' -56.6 NC_007346.1 + 128720 0.66 0.972796
Target:  5'- cCGGCGGCgGUgGCgGCGguGGC-GGCg -3'
miRNA:   3'- uGUUGCUG-CAgCGaCGCguCCGaCUG- -5'
32769 5' -56.6 NC_007346.1 + 201090 0.66 0.972796
Target:  5'- -aAACuGGCgGUgGUUGCGguGGUUGACu -3'
miRNA:   3'- ugUUG-CUG-CAgCGACGCguCCGACUG- -5'
32769 5' -56.6 NC_007346.1 + 181838 0.67 0.964273
Target:  5'- gGCGGCgGugGUgGUgGCGguGGCgggGACg -3'
miRNA:   3'- -UGUUG-CugCAgCGaCGCguCCGa--CUG- -5'
32769 5' -56.6 NC_007346.1 + 231147 0.67 0.964273
Target:  5'- aACAGC-ACGUCG--GCGCGGGCccGGCg -3'
miRNA:   3'- -UGUUGcUGCAGCgaCGCGUCCGa-CUG- -5'
32769 5' -56.6 NC_007346.1 + 56739 0.67 0.961058
Target:  5'- aGCAAUGGCGgggaUGCUgGCGguGGCggugaUGGCg -3'
miRNA:   3'- -UGUUGCUGCa---GCGA-CGCguCCG-----ACUG- -5'
32769 5' -56.6 NC_007346.1 + 365165 0.68 0.954038
Target:  5'- uGCAugGAUGUaaGCUugGCGgAGGUUGGCu -3'
miRNA:   3'- -UGUugCUGCAg-CGA--CGCgUCCGACUG- -5'
32769 5' -56.6 NC_007346.1 + 307164 0.69 0.928051
Target:  5'- gGCGGCGACGg-GCUGgggggcgGCGGGCUcGGCg -3'
miRNA:   3'- -UGUUGCUGCagCGACg------CGUCCGA-CUG- -5'
32769 5' -56.6 NC_007346.1 + 309729 0.69 0.928051
Target:  5'- gGCGGCGACGg-GCUGggaggcgGCGGGCUcGGCg -3'
miRNA:   3'- -UGUUGCUGCagCGACg------CGUCCGA-CUG- -5'
32769 5' -56.6 NC_007346.1 + 122197 0.69 0.922983
Target:  5'- -uGACGAUGUCGUUGCGUuacccGGGCa--- -3'
miRNA:   3'- ugUUGCUGCAGCGACGCG-----UCCGacug -5'
32769 5' -56.6 NC_007346.1 + 349789 0.69 0.917702
Target:  5'- gGCGGCGGCGgcgGCgGCGguGGCgugaGGCa -3'
miRNA:   3'- -UGUUGCUGCag-CGaCGCguCCGa---CUG- -5'
32769 5' -56.6 NC_007346.1 + 269793 0.72 0.813858
Target:  5'- uGCGACGugGUaugagaaUGgUGgGCGGGUUGACg -3'
miRNA:   3'- -UGUUGCugCA-------GCgACgCGUCCGACUG- -5'
32769 5' -56.6 NC_007346.1 + 87078 0.72 0.784306
Target:  5'- cGCAGCGACGUCGUUGUcgagcgacGCGaacgacugcugaguuGGCUGAa -3'
miRNA:   3'- -UGUUGCUGCAGCGACG--------CGU---------------CCGACUg -5'
32769 5' -56.6 NC_007346.1 + 87502 1.1 0.005849
Target:  5'- gACAACGACGUCGCUGCGCAGGCUGACg -3'
miRNA:   3'- -UGUUGCUGCAGCGACGCGUCCGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.