Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32770 | 3' | -49.4 | NC_007346.1 | + | 87808 | 0.66 | 0.999983 |
Target: 5'- gGUGGUAGUUCUggUGcUGGCAG-UCu -3' miRNA: 3'- gUACCAUCAAGGaaGUaGCCGUCuAG- -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 200489 | 0.66 | 0.999983 |
Target: 5'- gGUGGUGGUggaCUUUgauguggccagAUUGGCGGAUg -3' miRNA: 3'- gUACCAUCAag-GAAG-----------UAGCCGUCUAg -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 137434 | 0.66 | 0.999977 |
Target: 5'- gCAUGGcUGGUUCUg----CGGCGGGUg -3' miRNA: 3'- -GUACC-AUCAAGGaaguaGCCGUCUAg -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 56615 | 0.66 | 0.99997 |
Target: 5'- -cUGGUGGUUCCaUguUCGGUGGuAUUu -3' miRNA: 3'- guACCAUCAAGGaAguAGCCGUC-UAG- -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 86680 | 0.67 | 0.99991 |
Target: 5'- -uUGGUGGUcgcgaUCCagucgUAUCGGCGGAg- -3' miRNA: 3'- guACCAUCA-----AGGaa---GUAGCCGUCUag -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 170780 | 0.7 | 0.99851 |
Target: 5'- aUAUGGgaccgUCCgucgUCGUCGGCGGAcugUCa -3' miRNA: 3'- -GUACCauca-AGGa---AGUAGCCGUCU---AG- -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 258416 | 0.71 | 0.995189 |
Target: 5'- gGUGGUcccuuucuccgaaGGUUCaCUUCGUCaaagaggGGCGGAUCu -3' miRNA: 3'- gUACCA-------------UCAAG-GAAGUAG-------CCGUCUAG- -5' |
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32770 | 3' | -49.4 | NC_007346.1 | + | 103591 | 1.12 | 0.020777 |
Target: 5'- aCAUGGUAGUUCCUUCAUCGGCAGAUCg -3' miRNA: 3'- -GUACCAUCAAGGAAGUAGCCGUCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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