miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32770 3' -49.4 NC_007346.1 + 87808 0.66 0.999983
Target:  5'- gGUGGUAGUUCUggUGcUGGCAG-UCu -3'
miRNA:   3'- gUACCAUCAAGGaaGUaGCCGUCuAG- -5'
32770 3' -49.4 NC_007346.1 + 200489 0.66 0.999983
Target:  5'- gGUGGUGGUggaCUUUgauguggccagAUUGGCGGAUg -3'
miRNA:   3'- gUACCAUCAag-GAAG-----------UAGCCGUCUAg -5'
32770 3' -49.4 NC_007346.1 + 137434 0.66 0.999977
Target:  5'- gCAUGGcUGGUUCUg----CGGCGGGUg -3'
miRNA:   3'- -GUACC-AUCAAGGaaguaGCCGUCUAg -5'
32770 3' -49.4 NC_007346.1 + 56615 0.66 0.99997
Target:  5'- -cUGGUGGUUCCaUguUCGGUGGuAUUu -3'
miRNA:   3'- guACCAUCAAGGaAguAGCCGUC-UAG- -5'
32770 3' -49.4 NC_007346.1 + 86680 0.67 0.99991
Target:  5'- -uUGGUGGUcgcgaUCCagucgUAUCGGCGGAg- -3'
miRNA:   3'- guACCAUCA-----AGGaa---GUAGCCGUCUag -5'
32770 3' -49.4 NC_007346.1 + 170780 0.7 0.99851
Target:  5'- aUAUGGgaccgUCCgucgUCGUCGGCGGAcugUCa -3'
miRNA:   3'- -GUACCauca-AGGa---AGUAGCCGUCU---AG- -5'
32770 3' -49.4 NC_007346.1 + 258416 0.71 0.995189
Target:  5'- gGUGGUcccuuucuccgaaGGUUCaCUUCGUCaaagaggGGCGGAUCu -3'
miRNA:   3'- gUACCA-------------UCAAG-GAAGUAG-------CCGUCUAG- -5'
32770 3' -49.4 NC_007346.1 + 103591 1.12 0.020777
Target:  5'- aCAUGGUAGUUCCUUCAUCGGCAGAUCg -3'
miRNA:   3'- -GUACCAUCAAGGAAGUAGCCGUCUAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.