miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32770 5' -43.7 NC_007346.1 + 287490 0.66 1
Target:  5'- -cGCCGUugcaucGUUUC-GAACUACCAu -3'
miRNA:   3'- aaCGGUAuucu--UAAAGaCUUGAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 195623 0.68 1
Target:  5'- gUGCCAacu---UUUCUGGugUGCCAu -3'
miRNA:   3'- aACGGUauucuuAAAGACUugAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 66850 0.69 1
Target:  5'- aUUGCCAUGAGug---UUGAACUuCCGa -3'
miRNA:   3'- -AACGGUAUUCuuaaaGACUUGAuGGU- -5'
32770 5' -43.7 NC_007346.1 + 101278 0.69 1
Target:  5'- aUUGUgCAUGAuuuAUUUCUGAugUACCAg -3'
miRNA:   3'- -AACG-GUAUUcu-UAAAGACUugAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 334019 0.67 1
Target:  5'- -aGCCAUAacaauaugGGAAgUUCUcGggUUGCCAa -3'
miRNA:   3'- aaCGGUAU--------UCUUaAAGA-CuuGAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 68061 0.67 1
Target:  5'- aUGCaugaacaaacAAGAAgacUCUGGACUACCAa -3'
miRNA:   3'- aACGgua-------UUCUUaa-AGACUUGAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 273566 0.67 1
Target:  5'- cUUGCCAU--GAAUUuaccaUCUGggUUAUCAa -3'
miRNA:   3'- -AACGGUAuuCUUAA-----AGACuuGAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 221324 0.66 1
Target:  5'- gUUGCCu---GggUUgaaUCUGAACUACa- -3'
miRNA:   3'- -AACGGuauuCuuAA---AGACUUGAUGgu -5'
32770 5' -43.7 NC_007346.1 + 344192 0.66 1
Target:  5'- gUGCCAU--GGAUUUUUuagcgacgauacggGAACUGCCGg -3'
miRNA:   3'- aACGGUAuuCUUAAAGA--------------CUUGAUGGU- -5'
32770 5' -43.7 NC_007346.1 + 309624 0.66 1
Target:  5'- aUGCCGUAGGAGaaugcgcUUUCUuGGGCggcuucgUACCAc -3'
miRNA:   3'- aACGGUAUUCUU-------AAAGA-CUUG-------AUGGU- -5'
32770 5' -43.7 NC_007346.1 + 263099 0.67 1
Target:  5'- gUGCCAUGGGG--UUCaUGuuuuACUACCu -3'
miRNA:   3'- aACGGUAUUCUuaAAG-ACu---UGAUGGu -5'
32770 5' -43.7 NC_007346.1 + 15363 0.75 0.999146
Target:  5'- uUUGCUggAAGAGUUUCUGGAuCUACUg -3'
miRNA:   3'- -AACGGuaUUCUUAAAGACUU-GAUGGu -5'
32770 5' -43.7 NC_007346.1 + 103553 1.08 0.108427
Target:  5'- aUUGCCAUAAGAAUUUCUGAACUACCAc -3'
miRNA:   3'- -AACGGUAUUCUUAAAGACUUGAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.