miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32772 5' -55.1 NC_007346.1 + 61126 0.66 0.990503
Target:  5'- gGCGGagGAGGUgGUGAUGGC---GCCGGu -3'
miRNA:   3'- -UGCU--UUCCGgCGCUACCGauuCGGUU- -5'
32772 5' -55.1 NC_007346.1 + 50243 0.66 0.988311
Target:  5'- gACGAGcaauGGCCGCGgcGGCggaacaucagaaaauGCCAGc -3'
miRNA:   3'- -UGCUUu---CCGGCGCuaCCGauu------------CGGUU- -5'
32772 5' -55.1 NC_007346.1 + 197749 0.66 0.987886
Target:  5'- gGCGAuggugguGGUgGCGAUGGCggugGAGgCGAu -3'
miRNA:   3'- -UGCUuu-----CCGgCGCUACCGa---UUCgGUU- -5'
32772 5' -55.1 NC_007346.1 + 200630 0.66 0.984224
Target:  5'- gGCGAugguguuguuggugGAGGCgGUGAUGGUgauacauuuGGCCAc -3'
miRNA:   3'- -UGCU--------------UUCCGgCGCUACCGau-------UCGGUu -5'
32772 5' -55.1 NC_007346.1 + 310254 0.66 0.982957
Target:  5'- gGCGGAuuuGGCgGCGGUGGUaAAGgCGg -3'
miRNA:   3'- -UGCUUu--CCGgCGCUACCGaUUCgGUu -5'
32772 5' -55.1 NC_007346.1 + 116382 0.67 0.976647
Target:  5'- cCGAGuAGGCUGCGGUGGUacAAGCg-- -3'
miRNA:   3'- uGCUU-UCCGGCGCUACCGa-UUCGguu -5'
32772 5' -55.1 NC_007346.1 + 87206 0.67 0.975692
Target:  5'- cGCGAuggaggagcuuauGGGCCGCGcgGGCc--GCCGu -3'
miRNA:   3'- -UGCUu------------UCCGGCGCuaCCGauuCGGUu -5'
32772 5' -55.1 NC_007346.1 + 349783 0.67 0.974205
Target:  5'- gGCGGc-GGCgGCGGUGGCgUGAGgCAGc -3'
miRNA:   3'- -UGCUuuCCGgCGCUACCG-AUUCgGUU- -5'
32772 5' -55.1 NC_007346.1 + 49996 0.67 0.974205
Target:  5'- gGCGAuggugguGGUgGCGAUGGCgAGGCgGAu -3'
miRNA:   3'- -UGCUuu-----CCGgCGCUACCGaUUCGgUU- -5'
32772 5' -55.1 NC_007346.1 + 165597 0.67 0.974205
Target:  5'- gACGAAGguGGCgGCGAUGGUgguGGCgAu -3'
miRNA:   3'- -UGCUUU--CCGgCGCUACCGau-UCGgUu -5'
32772 5' -55.1 NC_007346.1 + 128670 0.68 0.968772
Target:  5'- cCGAAcGGCgGCGAUGGUgAAGCa-- -3'
miRNA:   3'- uGCUUuCCGgCGCUACCGaUUCGguu -5'
32772 5' -55.1 NC_007346.1 + 165567 0.68 0.96257
Target:  5'- gGCGAAGguGGCgGCGAUGGCgaugguGGCg-- -3'
miRNA:   3'- -UGCUUU--CCGgCGCUACCGau----UCGguu -5'
32772 5' -55.1 NC_007346.1 + 57512 0.68 0.959168
Target:  5'- gGCGAggGAGGCgGCGAUGGa--GGCgGAc -3'
miRNA:   3'- -UGCU--UUCCGgCGCUACCgauUCGgUU- -5'
32772 5' -55.1 NC_007346.1 + 353575 0.69 0.947706
Target:  5'- uCGcAAGGCUG-GucUGGCUAAGCCAAu -3'
miRNA:   3'- uGCuUUCCGGCgCu-ACCGAUUCGGUU- -5'
32772 5' -55.1 NC_007346.1 + 134806 0.69 0.929386
Target:  5'- -aGAAAGGCgGCGAagaaGGCggcaaagAAGCCAGu -3'
miRNA:   3'- ugCUUUCCGgCGCUa---CCGa------UUCGGUU- -5'
32772 5' -55.1 NC_007346.1 + 188405 0.71 0.868226
Target:  5'- gGCG-GAGGCgGCGAUGGCggAGGCg-- -3'
miRNA:   3'- -UGCuUUCCGgCGCUACCGa-UUCGguu -5'
32772 5' -55.1 NC_007346.1 + 110535 1.06 0.011969
Target:  5'- cACGAAAGGCCGCGAUGGCUAAGCCAAa -3'
miRNA:   3'- -UGCUUUCCGGCGCUACCGAUUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.