miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32773 5' -55.2 NC_007346.1 + 349346 0.66 0.992635
Target:  5'- cCUGCUgCCUcacgCCACcgCCGCCGCc-- -3'
miRNA:   3'- -GACGA-GGAca--GGUGaaGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 307041 0.67 0.984851
Target:  5'- cCUGCUCCaccaCCGCcuacUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGa---AGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 307384 0.67 0.984851
Target:  5'- -cGCUCCaccUCCACccaaUCCACCGCc-- -3'
miRNA:   3'- gaCGAGGac-AGGUGa---AGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 308455 0.67 0.984851
Target:  5'- cCUGCUCCaccaCCGCcuacUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGa---AGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 101077 0.69 0.959519
Target:  5'- gUGCuUCCUGUCUuucagcuuuucguGCUUCCAUUGCa-- -3'
miRNA:   3'- gACG-AGGACAGG-------------UGAAGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 185689 0.69 0.944556
Target:  5'- -cGUaCUUGUCCAUUUgCCGCCGCUc- -3'
miRNA:   3'- gaCGaGGACAGGUGAA-GGUGGCGAac -5'
32773 5' -55.2 NC_007346.1 + 218332 0.71 0.903709
Target:  5'- aCUGCUCCacccCCACUUCCucuGCUGCUUc -3'
miRNA:   3'- -GACGAGGaca-GGUGAAGG---UGGCGAAc -5'
32773 5' -55.2 NC_007346.1 + 57113 0.71 0.891359
Target:  5'- cCUGaUCCUGcUCCACcaCCACCGCcUGg -3'
miRNA:   3'- -GACgAGGAC-AGGUGaaGGUGGCGaAC- -5'
32773 5' -55.2 NC_007346.1 + 307329 0.71 0.891359
Target:  5'- cCUGCUCCaccgCCAUcUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGaAGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 307862 0.71 0.891359
Target:  5'- cCUGCUCCaccgCCAUcUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGaAGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 308135 0.71 0.891359
Target:  5'- cCUGCUCCaccgCCAUcUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGaAGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 307916 0.71 0.884873
Target:  5'- cCUGCUCCaccUCCACccaaUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGac-AGGUGa---AGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 308189 0.71 0.884873
Target:  5'- cCUGCUCCaccUCCACccaaUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGac-AGGUGa---AGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 306951 0.73 0.809667
Target:  5'- cCUGCUCCgccgCCAUcUCCACCGCc-- -3'
miRNA:   3'- -GACGAGGaca-GGUGaAGGUGGCGaac -5'
32773 5' -55.2 NC_007346.1 + 296681 0.77 0.58476
Target:  5'- uUGCcCCUG-CCGCUUCCGCUGCUa- -3'
miRNA:   3'- gACGaGGACaGGUGAAGGUGGCGAac -5'
32773 5' -55.2 NC_007346.1 + 156495 1.09 0.008978
Target:  5'- gCUGCUCCUGUCCACUUCCACCGCUUGa -3'
miRNA:   3'- -GACGAGGACAGGUGAAGGUGGCGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.