miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 3' -54.1 NC_007346.1 + 99608 0.66 0.994739
Target:  5'- cUAAuCGUguGGGCAAGUGuuGCAa-- -3'
miRNA:   3'- -GUUcGCAguCCCGUUUACggCGUgau -5'
32775 3' -54.1 NC_007346.1 + 133536 0.66 0.994739
Target:  5'- gAAGgGUCAGGGCAAGaGCgGUcUUGg -3'
miRNA:   3'- gUUCgCAGUCCCGUUUaCGgCGuGAU- -5'
32775 3' -54.1 NC_007346.1 + 364569 0.67 0.986845
Target:  5'- aCGAGCGUCAGGcgaauCAAAUGCCaucuugaGCAUc- -3'
miRNA:   3'- -GUUCGCAGUCCc----GUUUACGG-------CGUGau -5'
32775 3' -54.1 NC_007346.1 + 305133 0.68 0.979709
Target:  5'- -cAGCGUCGGuGGCGAGaauUGCgGCGgUGg -3'
miRNA:   3'- guUCGCAGUC-CCGUUU---ACGgCGUgAU- -5'
32775 3' -54.1 NC_007346.1 + 147500 0.68 0.979709
Target:  5'- uCGuuCGUCAGuGGCAucgauUGCCGCACc- -3'
miRNA:   3'- -GUucGCAGUC-CCGUuu---ACGGCGUGau -5'
32775 3' -54.1 NC_007346.1 + 177838 0.7 0.9356
Target:  5'- gCGGGUG-CGGGcGCAGGUGCgGCugUAg -3'
miRNA:   3'- -GUUCGCaGUCC-CGUUUACGgCGugAU- -5'
32775 3' -54.1 NC_007346.1 + 283579 0.71 0.920261
Target:  5'- uGAGCGUCGcaaGGCAAAUGCgGCAa-- -3'
miRNA:   3'- gUUCGCAGUc--CCGUUUACGgCGUgau -5'
32775 3' -54.1 NC_007346.1 + 160628 1.07 0.011905
Target:  5'- aCAAGCGUCAGGGCAAAUGCCGCACUAg -3'
miRNA:   3'- -GUUCGCAGUCCCGUUUACGGCGUGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.