Results 121 - 123 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
32775 | 5' | -56.7 | NC_007346.1 | + | 188804 | 0.82 | 0.317122 |
Target: 5'- uGGCGAUGguGGugGUGGCGauGGugGg -3' miRNA: 3'- -CCGUUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 197748 | 0.82 | 0.317122 |
Target: 5'- aGGCGAUGguGGugGUGGCGauggCGGugGa -3' miRNA: 3'- -CCGUUACguCCugCACCGUg---GCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 160578 | 1.1 | 0.006394 |
Target: 5'- gGGCAAUGCAGGACGUGGCACCGGACGu -3' miRNA: 3'- -CCGUUACGUCCUGCACCGUGGCCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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