miRNA display CGI


Results 81 - 100 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 260148 0.66 0.986901
Target:  5'- uGCGAaacgacGCAGGAgGUGGUAaaggCGGugGg -3'
miRNA:   3'- cCGUUa-----CGUCCUgCACCGUg---GCCugC- -5'
32775 5' -56.7 NC_007346.1 + 261862 0.66 0.986901
Target:  5'- -uCGAUGCAGGAacaacGCACCGGcaGCGg -3'
miRNA:   3'- ccGUUACGUCCUgcac-CGUGGCC--UGC- -5'
32775 5' -56.7 NC_007346.1 + 270687 0.75 0.648533
Target:  5'- cGGCAAUGguGgugaugGugGUGGCAUUGGugGu -3'
miRNA:   3'- -CCGUUACguC------CugCACCGUGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 272473 0.68 0.951128
Target:  5'- cGGCGGUgGC-GGAgGUGGCGgaGGugGc -3'
miRNA:   3'- -CCGUUA-CGuCCUgCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 306045 0.72 0.802671
Target:  5'- aGGCGGaagggGguGGACGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUa----CguCCUGCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 306227 0.7 0.902781
Target:  5'- uGGCGGUGgAGGAgaUGGCgguggagucGCCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCUgcACCG---------UGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 306278 0.68 0.951128
Target:  5'- cGGUAAUGguGGugGaggagaUGGUGgCGGugGu -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 306320 0.7 0.908538
Target:  5'- gGGCGGUGgAGG-CGgagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACgUCCuGC----ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307231 0.8 0.421793
Target:  5'- aGGCAAUGguGGugGUGGCGauggaGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCGUgg---CCugC- -5'
32775 5' -56.7 NC_007346.1 + 307333 0.71 0.871022
Target:  5'- aGGCGGUGguGGAguUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307620 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307842 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307893 0.71 0.849718
Target:  5'- aGGUAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307935 0.77 0.55026
Target:  5'- cGGCAAUGguGGugGagauggcggugggGGCACCGG-CGg -3'
miRNA:   3'- -CCGUUACguCCugCa------------CCGUGGCCuGC- -5'
32775 5' -56.7 NC_007346.1 + 307965 0.74 0.714386
Target:  5'- aGGCAAUGguGGugGaGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308103 0.7 0.890662
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308154 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308376 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308427 0.75 0.676961
Target:  5'- aGGCAAUGguGGugGcGGCAauGGugGu -3'
miRNA:   3'- -CCGUUACguCCugCaCCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308648 0.77 0.553981
Target:  5'- cGGCAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.