Results 81 - 100 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32775 | 5' | -56.7 | NC_007346.1 | + | 401578 | 0.7 | 0.902781 |
Target: 5'- uGGCcGUGCAGGugGUuguugagcGGCGCCcGcGGCu -3' miRNA: 3'- -CCGuUACGUCCugCA--------CCGUGG-C-CUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310345 | 0.71 | 0.849718 |
Target: 5'- aGGCGAgGguGGugGUgauGGCGgCGGACu -3' miRNA: 3'- -CCGUUaCguCCugCA---CCGUgGCCUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 310267 | 0.71 | 0.849718 |
Target: 5'- gGGCAAUGgCGGcGGCGgauuUGGCGgCGGugGu -3' miRNA: 3'- -CCGUUAC-GUC-CUGC----ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 307893 | 0.71 | 0.849718 |
Target: 5'- aGGUAAUGguGGugGcGGCAauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 308693 | 0.71 | 0.849718 |
Target: 5'- aGGUAAUGguGGugGcGGCAauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCaCCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 188942 | 0.71 | 0.842269 |
Target: 5'- uGGUGAUGguGGugGUGGUGauGGugGc -3' miRNA: 3'- -CCGUUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128617 | 0.72 | 0.826882 |
Target: 5'- uGGCGGUGgAGGugGUGGaGgUGGugGa -3' miRNA: 3'- -CCGUUACgUCCugCACCgUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189287 | 0.72 | 0.826882 |
Target: 5'- uGGUGAUGguGGugGUGGUGauGGugGu -3' miRNA: 3'- -CCGUUACguCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 180864 | 0.72 | 0.810883 |
Target: 5'- uGGCGGUGgAGGugGgggaaauaaUGGCGuuGGugGa -3' miRNA: 3'- -CCGUUACgUCCugC---------ACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 63438 | 0.71 | 0.856997 |
Target: 5'- uGGCAAUGguGGugGaGGCaaaGCUGGAg- -3' miRNA: 3'- -CCGUUACguCCugCaCCG---UGGCCUgc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 189332 | 0.71 | 0.864099 |
Target: 5'- uGGUGAUGgGGGugGUGGUGauGGugGa -3' miRNA: 3'- -CCGUUACgUCCugCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 311738 | 0.71 | 0.871022 |
Target: 5'- cGGUAAUgGC-GGugGUGGCGgUGGugGc -3' miRNA: 3'- -CCGUUA-CGuCCugCACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 306227 | 0.7 | 0.902781 |
Target: 5'- uGGCGGUGgAGGAgaUGGCgguggagucGCCGGugGu -3' miRNA: 3'- -CCGUUACgUCCUgcACCG---------UGGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128179 | 0.7 | 0.896821 |
Target: 5'- cGGUGAUGguGGugGUGG-ACUuGGugGa -3' miRNA: 3'- -CCGUUACguCCugCACCgUGG-CCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 178710 | 0.7 | 0.896821 |
Target: 5'- uGGUGAUGguGGAaGUGGCGauGGugGu -3' miRNA: 3'- -CCGUUACguCCUgCACCGUggCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 181836 | 0.7 | 0.896821 |
Target: 5'- nGGCGGUGguGGugGcggUGGCGg-GGACGg -3' miRNA: 3'- -CCGUUACguCCugC---ACCGUggCCUGC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 308103 | 0.7 | 0.890662 |
Target: 5'- uGGUAAUGguGGugGaggagaUGGCGgUGGugGa -3' miRNA: 3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128068 | 0.71 | 0.877759 |
Target: 5'- uGGUAAUGguGGugGUaauGGCGgaGGACu -3' miRNA: 3'- -CCGUUACguCCugCA---CCGUggCCUGc -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 128314 | 0.71 | 0.873739 |
Target: 5'- uGGCGAUGguGGugGacuuggugguggcgaUGGCGgUGGugGu -3' miRNA: 3'- -CCGUUACguCCugC---------------ACCGUgGCCugC- -5' |
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32775 | 5' | -56.7 | NC_007346.1 | + | 307333 | 0.71 | 0.871022 |
Target: 5'- aGGCGGUGguGGAguUGGUGgCGGugGa -3' miRNA: 3'- -CCGUUACguCCUgcACCGUgGCCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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