miRNA display CGI


Results 101 - 120 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32775 5' -56.7 NC_007346.1 + 306045 0.72 0.802671
Target:  5'- aGGCGGaagggGguGGACGUGGCGgUGGAg- -3'
miRNA:   3'- -CCGUUa----CguCCUGCACCGUgGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 189521 0.73 0.794325
Target:  5'- cGGUGAUGguGGugGUGGagaCGGugGc -3'
miRNA:   3'- -CCGUUACguCCugCACCgugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 314684 0.73 0.772051
Target:  5'- gGGCGGUGguGGAUauugggcagggggugGUGGUugUGGugGa -3'
miRNA:   3'- -CCGUUACguCCUG---------------CACCGugGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307842 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 308376 0.73 0.768556
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 310345 0.71 0.849718
Target:  5'- aGGCGAgGguGGugGUgauGGCGgCGGACu -3'
miRNA:   3'- -CCGUUaCguCCugCA---CCGUgGCCUGc -5'
32775 5' -56.7 NC_007346.1 + 63438 0.71 0.856997
Target:  5'- uGGCAAUGguGGugGaGGCaaaGCUGGAg- -3'
miRNA:   3'- -CCGUUACguCCugCaCCG---UGGCCUgc -5'
32775 5' -56.7 NC_007346.1 + 189332 0.71 0.864099
Target:  5'- uGGUGAUGgGGGugGUGGUGauGGugGa -3'
miRNA:   3'- -CCGUUACgUCCugCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 306320 0.7 0.908538
Target:  5'- gGGCGGUGgAGG-CGgagaUGGCGgCGGugGa -3'
miRNA:   3'- -CCGUUACgUCCuGC----ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 349796 0.7 0.902781
Target:  5'- cGGCGGUgGCGGcGGCGgcGGCGgCGGugGc -3'
miRNA:   3'- -CCGUUA-CGUC-CUGCa-CCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 401578 0.7 0.902781
Target:  5'- uGGCcGUGCAGGugGUuguugagcGGCGCCcGcGGCu -3'
miRNA:   3'- -CCGuUACGUCCugCA--------CCGUGG-C-CUGc -5'
32775 5' -56.7 NC_007346.1 + 306227 0.7 0.902781
Target:  5'- uGGCGGUGgAGGAgaUGGCgguggagucGCCGGugGu -3'
miRNA:   3'- -CCGUUACgUCCUgcACCG---------UGGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128179 0.7 0.896821
Target:  5'- cGGUGAUGguGGugGUGG-ACUuGGugGa -3'
miRNA:   3'- -CCGUUACguCCugCACCgUGG-CCugC- -5'
32775 5' -56.7 NC_007346.1 + 178710 0.7 0.896821
Target:  5'- uGGUGAUGguGGAaGUGGCGauGGugGu -3'
miRNA:   3'- -CCGUUACguCCUgCACCGUggCCugC- -5'
32775 5' -56.7 NC_007346.1 + 181836 0.7 0.896821
Target:  5'- nGGCGGUGguGGugGcggUGGCGg-GGACGg -3'
miRNA:   3'- -CCGUUACguCCugC---ACCGUggCCUGC- -5'
32775 5' -56.7 NC_007346.1 + 308103 0.7 0.890662
Target:  5'- uGGUAAUGguGGugGaggagaUGGCGgUGGugGa -3'
miRNA:   3'- -CCGUUACguCCugC------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 128068 0.71 0.877759
Target:  5'- uGGUAAUGguGGugGUaauGGCGgaGGACu -3'
miRNA:   3'- -CCGUUACguCCugCA---CCGUggCCUGc -5'
32775 5' -56.7 NC_007346.1 + 128314 0.71 0.873739
Target:  5'- uGGCGAUGguGGugGacuuggugguggcgaUGGCGgUGGugGu -3'
miRNA:   3'- -CCGUUACguCCugC---------------ACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 307333 0.71 0.871022
Target:  5'- aGGCGGUGguGGAguUGGUGgCGGugGa -3'
miRNA:   3'- -CCGUUACguCCUgcACCGUgGCCugC- -5'
32775 5' -56.7 NC_007346.1 + 311738 0.71 0.871022
Target:  5'- cGGUAAUgGC-GGugGUGGCGgUGGugGc -3'
miRNA:   3'- -CCGUUA-CGuCCugCACCGUgGCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.