miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32776 3' -53.3 NC_007346.1 + 237720 0.66 0.998859
Target:  5'- uUCUugUACAuacugauCCCGgAUCGGGUUUAa- -3'
miRNA:   3'- -AGAugAUGU-------GGGUgUGGCCCAGAUcu -5'
32776 3' -53.3 NC_007346.1 + 70691 0.66 0.998752
Target:  5'- cCUugUAUugCCAC-CCGGuacaaagggaagaccGUCUGGGu -3'
miRNA:   3'- aGAugAUGugGGUGuGGCC---------------CAGAUCU- -5'
32776 3' -53.3 NC_007346.1 + 353305 0.66 0.998661
Target:  5'- --gAUUACACCCACGa-GGGUgUAGu -3'
miRNA:   3'- agaUGAUGUGGGUGUggCCCAgAUCu -5'
32776 3' -53.3 NC_007346.1 + 214341 0.66 0.998661
Target:  5'- aCUGCcuuuguaaACGCCUcgaaGCACCGGGUUuugUGGAc -3'
miRNA:   3'- aGAUGa-------UGUGGG----UGUGGCCCAG---AUCU- -5'
32776 3' -53.3 NC_007346.1 + 214637 0.66 0.998661
Target:  5'- aCUGCcuuuguaaACGCCUcgaaGCACCGGGUUuugUGGAc -3'
miRNA:   3'- aGAUGa-------UGUGGG----UGUGGCCCAG---AUCU- -5'
32776 3' -53.3 NC_007346.1 + 179990 0.66 0.998407
Target:  5'- -gUGC-ACGCCCAUACUguGGGUC-GGAu -3'
miRNA:   3'- agAUGaUGUGGGUGUGG--CCCAGaUCU- -5'
32776 3' -53.3 NC_007346.1 + 213950 0.66 0.997777
Target:  5'- cUUUGCaaACGCCUcgaaGCACCGGGUUuugUGGAc -3'
miRNA:   3'- -AGAUGa-UGUGGG----UGUGGCCCAG---AUCU- -5'
32776 3' -53.3 NC_007346.1 + 214741 0.66 0.997777
Target:  5'- cUUUGCaaACGCCUcgaaGCACCGGGUUuugUGGAc -3'
miRNA:   3'- -AGAUGa-UGUGGG----UGUGGCCCAG---AUCU- -5'
32776 3' -53.3 NC_007346.1 + 124450 0.67 0.99645
Target:  5'- gCUGCUGCgAUUgACGCCGGGUacaaAGAu -3'
miRNA:   3'- aGAUGAUG-UGGgUGUGGCCCAga--UCU- -5'
32776 3' -53.3 NC_007346.1 + 29763 0.67 0.995179
Target:  5'- aCUaACUGCAaaauaaCCAUACUuguuuuuGGGUCUAGAu -3'
miRNA:   3'- aGA-UGAUGUg-----GGUGUGG-------CCCAGAUCU- -5'
32776 3' -53.3 NC_007346.1 + 40008 0.68 0.990044
Target:  5'- gUCUAgUGCACCgACagccaccgaguggcuGCCGGGUCg--- -3'
miRNA:   3'- -AGAUgAUGUGGgUG---------------UGGCCCAGaucu -5'
32776 3' -53.3 NC_007346.1 + 373219 0.72 0.945166
Target:  5'- uUCUGCUACGCCagcauCACCGGG---GGAa -3'
miRNA:   3'- -AGAUGAUGUGGgu---GUGGCCCagaUCU- -5'
32776 3' -53.3 NC_007346.1 + 263842 0.72 0.945166
Target:  5'- -gUACaACACCCACACgGGGUgCUuGAa -3'
miRNA:   3'- agAUGaUGUGGGUGUGgCCCA-GAuCU- -5'
32776 3' -53.3 NC_007346.1 + 64225 0.74 0.856871
Target:  5'- cUUAUUGCACCCGCACUccguGGGUCUucguauaAGAa -3'
miRNA:   3'- aGAUGAUGUGGGUGUGG----CCCAGA-------UCU- -5'
32776 3' -53.3 NC_007346.1 + 165178 1.1 0.012779
Target:  5'- cUCUACUACACCCACACCGGGUCUAGAg -3'
miRNA:   3'- -AGAUGAUGUGGGUGUGGCCCAGAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.