miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32776 5' -57.8 NC_007346.1 + 228347 0.66 0.975547
Target:  5'- aCGCCGCCgggauuGACUGAGaCGCcgccGGGAUUGa- -3'
miRNA:   3'- -GCGGUGG------CUGGCUC-GCG----CUCUAACgu -5'
32776 5' -57.8 NC_007346.1 + 70966 0.66 0.975547
Target:  5'- uGCagCACCGAuaCCGAuGCGCGAGc--GCAu -3'
miRNA:   3'- gCG--GUGGCU--GGCU-CGCGCUCuaaCGU- -5'
32776 5' -57.8 NC_007346.1 + 228284 0.66 0.967778
Target:  5'- aCGCCGCCgggauuGACUGAGaCGCcgccGGGAUUGgGu -3'
miRNA:   3'- -GCGGUGG------CUGGCUC-GCG----CUCUAACgU- -5'
32776 5' -57.8 NC_007346.1 + 50806 0.67 0.954902
Target:  5'- aCGCCAgUGAcaaCCGccauaGCGAGGUUGCAu -3'
miRNA:   3'- -GCGGUgGCU---GGCucg--CGCUCUAACGU- -5'
32776 5' -57.8 NC_007346.1 + 208053 0.67 0.954902
Target:  5'- aCGCCguGCCGuucguGCCGAGCucguUGAGAUUGUu -3'
miRNA:   3'- -GCGG--UGGC-----UGGCUCGc---GCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 306387 0.67 0.947312
Target:  5'- uGCaGCCGugCG-GCGCGAGGgaacgGCu -3'
miRNA:   3'- gCGgUGGCugGCuCGCGCUCUaa---CGu -5'
32776 5' -57.8 NC_007346.1 + 243103 0.67 0.947312
Target:  5'- -uCCGCCGACauuGAGCGCGcg--UGCAa -3'
miRNA:   3'- gcGGUGGCUGg--CUCGCGCucuaACGU- -5'
32776 5' -57.8 NC_007346.1 + 86887 0.67 0.938483
Target:  5'- aCGuCCACCucgaggcGGCCGAGCGUGA---UGCGc -3'
miRNA:   3'- -GC-GGUGG-------CUGGCUCGCGCUcuaACGU- -5'
32776 5' -57.8 NC_007346.1 + 228389 0.68 0.919704
Target:  5'- aCGCCACCGAguuugaCUGAGaCGCcgucGAGAUUGa- -3'
miRNA:   3'- -GCGGUGGCU------GGCUC-GCG----CUCUAACgu -5'
32776 5' -57.8 NC_007346.1 + 308986 0.69 0.903146
Target:  5'- gCGCaGCCGugCG-GCGCGAGGgaacgGCu -3'
miRNA:   3'- -GCGgUGGCugGCuCGCGCUCUaa---CGu -5'
32776 5' -57.8 NC_007346.1 + 272055 0.69 0.88479
Target:  5'- cCGCCACCG-CCG-GUGCGucGGUccucUGCAa -3'
miRNA:   3'- -GCGGUGGCuGGCuCGCGCu-CUA----ACGU- -5'
32776 5' -57.8 NC_007346.1 + 258904 0.69 0.878285
Target:  5'- aCGCguCCGAgCGugGGuCGCGAGAUUGUg -3'
miRNA:   3'- -GCGguGGCUgGC--UC-GCGCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 259969 0.71 0.811835
Target:  5'- uGCgACCGAgCGugGGuCGCGAGAUUGUg -3'
miRNA:   3'- gCGgUGGCUgGC--UC-GCGCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 257529 0.71 0.811835
Target:  5'- uGCgACCGAgCGugGGuCGCGAGAUUGUg -3'
miRNA:   3'- gCGgUGGCUgGC--UC-GCGCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 256791 0.71 0.811835
Target:  5'- uGCgACCGAgCGugGGuCGCGAGAUUGUg -3'
miRNA:   3'- gCGgUGGCUgGC--UC-GCGCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 258130 0.75 0.621006
Target:  5'- gGCCGCUGcguCCGAGCguggcucGCGAGAUUGUg -3'
miRNA:   3'- gCGGUGGCu--GGCUCG-------CGCUCUAACGu -5'
32776 5' -57.8 NC_007346.1 + 292605 0.77 0.498757
Target:  5'- cCGCCACCGgggcagccauacccGCCGAGCGCGAuGUgGCGc -3'
miRNA:   3'- -GCGGUGGC--------------UGGCUCGCGCUcUAaCGU- -5'
32776 5' -57.8 NC_007346.1 + 254653 0.78 0.432463
Target:  5'- uCGCCGCCuucuCUGcGCGCGAGAUUGCGc -3'
miRNA:   3'- -GCGGUGGcu--GGCuCGCGCUCUAACGU- -5'
32776 5' -57.8 NC_007346.1 + 253543 0.81 0.299771
Target:  5'- gGCCACCuucuCCGcGCGCGAGAUUGCGc -3'
miRNA:   3'- gCGGUGGcu--GGCuCGCGCUCUAACGU- -5'
32776 5' -57.8 NC_007346.1 + 242474 0.82 0.293399
Target:  5'- uGCCACCGccuucuCCGcGCGUGAGAUUGCAc -3'
miRNA:   3'- gCGGUGGCu-----GGCuCGCGCUCUAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.