Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 3' | -54.4 | NC_007346.1 | + | 50432 | 0.72 | 0.877644 |
Target: 5'- -------cGCcucgCCAUCGCCACCACCAc -3' miRNA: 3'- ugcaacaaCGa---GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309256 | 0.72 | 0.870711 |
Target: 5'- aGCGUggacugUGUcccuucgCCGUCGCCGCCGCCGc -3' miRNA: 3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306744 | 0.72 | 0.870711 |
Target: 5'- -------aGC-CCGUCGCCGCCGCCAa -3' miRNA: 3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 199274 | 0.73 | 0.856264 |
Target: 5'- -------cGCcgCCAUCGCCGCCGCCAu -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 309310 | 0.73 | 0.841077 |
Target: 5'- -------aGC-CCGUCGCCGCCACCAa -3' miRNA: 3'- ugcaacaaCGaGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 198066 | 0.74 | 0.791569 |
Target: 5'- -------cGCcgCCAUCGCCACCACCAu -3' miRNA: 3'- ugcaacaaCGa-GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 188365 | 0.75 | 0.773938 |
Target: 5'- ---aUGUU-CUCCAccaUCGCCACCACCAc -3' miRNA: 3'- ugcaACAAcGAGGU---AGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306798 | 0.75 | 0.764945 |
Target: 5'- --------cCUCCAUCGCCACCACCAc -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 311009 | 0.75 | 0.755845 |
Target: 5'- --------cCUCCAUCGCCACCACCAu -3' miRNA: 3'- ugcaacaacGAGGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 329890 | 0.75 | 0.737352 |
Target: 5'- --aUUGUcUGCUCCAUCGCCAuuauCCACCc -3' miRNA: 3'- ugcAACA-ACGAGGUAGCGGU----GGUGGu -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 306690 | 0.75 | 0.737352 |
Target: 5'- aGCGUggacugUGCcccuucgCCGUCGCCGCCGCCGc -3' miRNA: 3'- -UGCAaca---ACGa------GGUAGCGGUGGUGGU- -5' |
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32777 | 3' | -54.4 | NC_007346.1 | + | 166046 | 1.08 | 0.011707 |
Target: 5'- aACGUUGUUGCUCCAUCGCCACCACCAu -3' miRNA: 3'- -UGCAACAACGAGGUAGCGGUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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