Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 200465 | 0.7 | 0.906869 |
Target: 5'- -----cCGCCACCGUUGCCAccaccaccauggUCGCCc -3' miRNA: 3'- gaagcaGCGGUGGUAGCGGU------------AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 272017 | 0.7 | 0.900477 |
Target: 5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3' miRNA: 3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 270225 | 0.7 | 0.895068 |
Target: 5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 238898 | 0.7 | 0.906869 |
Target: 5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3' miRNA: 3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 124770 | 0.7 | 0.906869 |
Target: 5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3' miRNA: 3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 309498 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 308240 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307973 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307700 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307439 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307167 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 304708 | 0.71 | 0.85504 |
Target: 5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3' miRNA: 3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127862 | 0.71 | 0.869124 |
Target: 5'- ----aUCaCCACCAcCGCCAUCGCCa -3' miRNA: 3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 189497 | 0.71 | 0.875895 |
Target: 5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3' miRNA: 3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127806 | 0.71 | 0.875895 |
Target: 5'- --cCGcCaCCACCGUCGCCGcCGCCa -3' miRNA: 3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 329920 | 0.71 | 0.87855 |
Target: 5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3' miRNA: 3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 188377 | 0.71 | 0.869124 |
Target: 5'- ----aUCGCCACCAcCaCCAUCGCCa -3' miRNA: 3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200141 | 0.72 | 0.824836 |
Target: 5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3' miRNA: 3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 316271 | 0.72 | 0.816894 |
Target: 5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3' miRNA: 3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 188446 | 0.72 | 0.832628 |
Target: 5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3' miRNA: 3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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