Results 61 - 80 of 105 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 238774 | 0.69 | 0.930933 |
Target: 5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3' miRNA: 3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 59257 | 0.69 | 0.925074 |
Target: 5'- -aUCGUuuucuccaccgccauUGCCuCCAUCGCCAUaucCGCCa -3' miRNA: 3'- gaAGCA---------------GCGGuGGUAGCGGUA---GCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 198850 | 0.69 | 0.923055 |
Target: 5'- -aUCucCGCCACCAccaccaccacCGCCAUCGCCu -3' miRNA: 3'- gaAGcaGCGGUGGUa---------GCGGUAGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 310946 | 0.68 | 0.945935 |
Target: 5'- --cCGUCGCCGCCGccuucUCuGCCGucaagcucacccUCGCCu -3' miRNA: 3'- gaaGCAGCGGUGGU-----AG-CGGU------------AGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 189112 | 0.68 | 0.945935 |
Target: 5'- -----cCGCCGCCAUCuCCAcCGCCGc -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 200798 | 0.68 | 0.960622 |
Target: 5'- uUUCacCGCCACCAUCGCCGgaaCCa -3' miRNA: 3'- gAAGcaGCGGUGGUAGCGGUagcGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 198289 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCuCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 306747 | 0.68 | 0.95367 |
Target: 5'- --cCGUCGCCGCCGccaaGuCCAcCGCCa -3' miRNA: 3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 127956 | 0.68 | 0.955123 |
Target: 5'- cCUUCGcCGCCGCCGcCGCCuccaccaugguggcaGgCGCCa -3' miRNA: 3'- -GAAGCaGCGGUGGUaGCGG---------------UaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 198496 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCaCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 61615 | 0.68 | 0.945935 |
Target: 5'- --cCGgCGCCACCucCGCCuUCGCCu -3' miRNA: 3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 392456 | 0.68 | 0.949902 |
Target: 5'- ---aGUCGCCgaGCCAgucacugaGCCAgUCGCCGa -3' miRNA: 3'- gaagCAGCGG--UGGUag------CGGU-AGCGGC- -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 198664 | 0.68 | 0.960622 |
Target: 5'- -----cCGCCACCAUCaCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 110567 | 0.67 | 0.97229 |
Target: 5'- --cCGUCaGCCACCA-CGUgCAUCGCUc -3' miRNA: 3'- gaaGCAG-CGGUGGUaGCG-GUAGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 127779 | 0.67 | 0.969642 |
Target: 5'- --cCGUCaCCGCCAUCuCCGcCGCCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGcGGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 306872 | 0.67 | 0.969642 |
Target: 5'- -aUCucCGCCGCCAUCuCCAcCGCCa -3' miRNA: 3'- gaAGcaGCGGUGGUAGcGGUaGCGGc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 55176 | 0.67 | 0.97708 |
Target: 5'- gUUCGUCaUCAUCAUCGCCAaacUUGCg- -3' miRNA: 3'- gAAGCAGcGGUGGUAGCGGU---AGCGgc -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 401520 | 0.67 | 0.97708 |
Target: 5'- --cCGcCGCCugCAgcuGCCAUCGCgGc -3' miRNA: 3'- gaaGCaGCGGugGUag-CGGUAGCGgC- -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 57885 | 0.67 | 0.974768 |
Target: 5'- -aUCucCGCCACCGcCGUUAUUGCCGc -3' miRNA: 3'- gaAGcaGCGGUGGUaGCGGUAGCGGC- -5' |
|||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 259241 | 0.67 | 0.963812 |
Target: 5'- uUUCGUCGCCAugcCCAUCGaCGaaacCGUCGa -3' miRNA: 3'- gAAGCAGCGGU---GGUAGCgGUa---GCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home