Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 259241 | 0.67 | 0.963812 |
Target: 5'- uUUCGUCGCCAugcCCAUCGaCGaaacCGUCGa -3' miRNA: 3'- gAAGCAGCGGU---GGUAGCgGUa---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 260719 | 0.69 | 0.92804 |
Target: 5'- --gCGUCGCC-CaacUCGCCAacUCGCCa -3' miRNA: 3'- gaaGCAGCGGuGgu-AGCGGU--AGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 266283 | 0.66 | 0.986368 |
Target: 5'- aUUCugaGCCAUUuUCGCCGUCGUCa -3' miRNA: 3'- gAAGcagCGGUGGuAGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 270161 | 0.66 | 0.984793 |
Target: 5'- -aUCGUCacguucaCCACCAUCaCCAUcacCGCCGc -3' miRNA: 3'- gaAGCAGc------GGUGGUAGcGGUA---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 270225 | 0.7 | 0.895068 |
Target: 5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 272017 | 0.7 | 0.900477 |
Target: 5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3' miRNA: 3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 273046 | 0.69 | 0.932821 |
Target: 5'- -gUCGUCGCCGaaacacaCGUCGCCA-C-CCGa -3' miRNA: 3'- gaAGCAGCGGUg------GUAGCGGUaGcGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 274105 | 0.69 | 0.937396 |
Target: 5'- aUUCGcCGCCuCCGaaUCGCCGaaauugCGCCGc -3' miRNA: 3'- gAAGCaGCGGuGGU--AGCGGUa-----GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 274755 | 0.66 | 0.979233 |
Target: 5'- --aUGUCuGCCGCCAcgcucagccgUCGugcCCGUCGCCa -3' miRNA: 3'- gaaGCAG-CGGUGGU----------AGC---GGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 292155 | 0.66 | 0.983083 |
Target: 5'- ---aGgCGCCACCAUCGCgcUCGgCGg -3' miRNA: 3'- gaagCaGCGGUGGUAGCGguAGCgGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 304708 | 0.71 | 0.85504 |
Target: 5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3' miRNA: 3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306711 | 0.77 | 0.561643 |
Target: 5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3' miRNA: 3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306747 | 0.68 | 0.95367 |
Target: 5'- --cCGUCGCCGCCGccaaGuCCAcCGCCa -3' miRNA: 3'- gaaGCAGCGGUGGUag--C-GGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306803 | 0.66 | 0.981232 |
Target: 5'- ----aUCGCCACCAcCaCCAUUGCCu -3' miRNA: 3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306872 | 0.67 | 0.969642 |
Target: 5'- -aUCucCGCCGCCAUCuCCAcCGCCa -3' miRNA: 3'- gaAGcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306957 | 0.67 | 0.97229 |
Target: 5'- -----cCGCCGCCAUCuCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307167 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307439 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307700 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 307973 | 0.7 | 0.906869 |
Target: 5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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