miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 270225 0.7 0.895068
Target:  5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 270161 0.66 0.984793
Target:  5'- -aUCGUCacguucaCCACCAUCaCCAUcacCGCCGc -3'
miRNA:   3'- gaAGCAGc------GGUGGUAGcGGUA---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 266283 0.66 0.986368
Target:  5'- aUUCugaGCCAUUuUCGCCGUCGUCa -3'
miRNA:   3'- gAAGcagCGGUGGuAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 260719 0.69 0.92804
Target:  5'- --gCGUCGCC-CaacUCGCCAacUCGCCa -3'
miRNA:   3'- gaaGCAGCGGuGgu-AGCGGU--AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 259241 0.67 0.963812
Target:  5'- uUUCGUCGCCAugcCCAUCGaCGaaacCGUCGa -3'
miRNA:   3'- gAAGCAGCGGU---GGUAGCgGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 242463 0.69 0.932821
Target:  5'- ----aUCGCCGCCuUUGCCAcCGCCu -3'
miRNA:   3'- gaagcAGCGGUGGuAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238898 0.7 0.906869
Target:  5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3'
miRNA:   3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238774 0.69 0.930933
Target:  5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3'
miRNA:   3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 238723 0.73 0.759409
Target:  5'- --cCGUCGCCggucgaaggugagccACCGUCGCCAgucgcagaugagCGCCGu -3'
miRNA:   3'- gaaGCAGCGG---------------UGGUAGCGGUa-----------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 238501 0.66 0.983083
Target:  5'- gUUCaUCGCCGCCAUCaGCUcgcaucaucccaGUCGUCc -3'
miRNA:   3'- gAAGcAGCGGUGGUAG-CGG------------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200798 0.68 0.960622
Target:  5'- uUUCacCGCCACCAUCGCCGgaaCCa -3'
miRNA:   3'- gAAGcaGCGGUGGUAGCGGUagcGGc -5'
32777 5' -56.8 NC_007346.1 + 200465 0.7 0.906869
Target:  5'- -----cCGCCACCGUUGCCAccaccaccauggUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGU------------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200258 0.75 0.646595
Target:  5'- --cCGUCGCCAUCAcCGCCAUCuCCa -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 200218 0.69 0.92804
Target:  5'- ----aUCGCCAUCAcCGCCAcCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200141 0.72 0.824836
Target:  5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3'
miRNA:   3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5'
32777 5' -56.8 NC_007346.1 + 199275 0.77 0.580364
Target:  5'- -----cCGCCGCCAUCGCCGcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 199248 0.69 0.937396
Target:  5'- -----cCGCCACCAUcucCGCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUA---GCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 199225 0.69 0.941767
Target:  5'- ----aUCuCCGCCAcCGCCAUCGCCc -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198850 0.69 0.923055
Target:  5'- -aUCucCGCCACCAccaccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaAGcaGCGGUGGUa---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198742 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.