Results 81 - 100 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 166043 | 0.73 | 0.766448 |
Target: 5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3' miRNA: 3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 166010 | 1.08 | 0.00878 |
Target: 5'- cCUUCGUCGCCACCAUCGCCAUCGCCGc -3' miRNA: 3'- -GAAGCAGCGGUGGUAGCGGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 164891 | 0.67 | 0.97229 |
Target: 5'- -aUCGcuuaGaCCAUCAUCGUCAUCGUCa -3' miRNA: 3'- gaAGCag--C-GGUGGUAGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 128286 | 0.76 | 0.637112 |
Target: 5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 128118 | 0.69 | 0.923055 |
Target: 5'- --cCGcCGCCAUcugCAUCGCCAUCaCCGc -3' miRNA: 3'- gaaGCaGCGGUG---GUAGCGGUAGcGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 128067 | 0.66 | 0.983783 |
Target: 5'- -----cCGCCGCCAUcaaucucaccuucgcCGCCGUCGUCu -3' miRNA: 3'- gaagcaGCGGUGGUA---------------GCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127956 | 0.68 | 0.955123 |
Target: 5'- cCUUCGcCGCCGCCGcCGCCuccaccaugguggcaGgCGCCa -3' miRNA: 3'- -GAAGCaGCGGUGGUaGCGG---------------UaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127916 | 0.73 | 0.757639 |
Target: 5'- ----aUCGCCACCAcCGCCAUcucCGCCGc -3' miRNA: 3'- gaagcAGCGGUGGUaGCGGUA---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127890 | 0.82 | 0.344165 |
Target: 5'- ---aGUCcaCCACCAUCGCCAUCGCCa -3' miRNA: 3'- gaagCAGc-GGUGGUAGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127862 | 0.71 | 0.869124 |
Target: 5'- ----aUCaCCACCAcCGCCAUCGCCa -3' miRNA: 3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127806 | 0.71 | 0.875895 |
Target: 5'- --cCGcCaCCACCGUCGCCGcCGCCa -3' miRNA: 3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127779 | 0.67 | 0.969642 |
Target: 5'- --cCGUCaCCGCCAUCuCCGcCGCCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGcGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 126006 | 0.73 | 0.766448 |
Target: 5'- -gUCGUCGUCAUCAUCGUCAUCaUCa -3' miRNA: 3'- gaAGCAGCGGUGGUAGCGGUAGcGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 124770 | 0.7 | 0.906869 |
Target: 5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3' miRNA: 3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 110567 | 0.67 | 0.97229 |
Target: 5'- --cCGUCaGCCACCA-CGUgCAUCGCUc -3' miRNA: 3'- gaaGCAG-CGGUGGUaGCG-GUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 61615 | 0.68 | 0.945935 |
Target: 5'- --cCGgCGCCACCucCGCCuUCGCCu -3' miRNA: 3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 60158 | 0.69 | 0.92804 |
Target: 5'- -----cCGCCACCAUCaCCAcCGCCGc -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 59257 | 0.69 | 0.925074 |
Target: 5'- -aUCGUuuucuccaccgccauUGCCuCCAUCGCCAUaucCGCCa -3' miRNA: 3'- gaAGCA---------------GCGGuGGUAGCGGUA---GCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 58498 | 0.78 | 0.515658 |
Target: 5'- cCUUCGUCGCCACC---GCCGUCaCCGa -3' miRNA: 3'- -GAAGCAGCGGUGGuagCGGUAGcGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 57956 | 0.76 | 0.627627 |
Target: 5'- --cCGUCGCCAaguccgccuCCAUCGCCGccucccUCGCCa -3' miRNA: 3'- gaaGCAGCGGU---------GGUAGCGGU------AGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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