miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 309566 0.66 0.981232
Target:  5'- -aUUGcCGCCACCAccaUUGCCuccacCGCCa -3'
miRNA:   3'- gaAGCaGCGGUGGU---AGCGGua---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 309369 0.66 0.983083
Target:  5'- ----aUCGCCACCAcC-CCAUUGCCu -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238501 0.66 0.983083
Target:  5'- gUUCaUCGCCGCCAUCaGCUcgcaucaucccaGUCGUCc -3'
miRNA:   3'- gAAGcAGCGGUGGUAG-CGG------------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 187649 0.67 0.97708
Target:  5'- --cCGcCGCCGCCcaCGCCGcCGCCc -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127890 0.82 0.344165
Target:  5'- ---aGUCcaCCACCAUCGCCAUCGCCa -3'
miRNA:   3'- gaagCAGc-GGUGGUAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 310026 0.66 0.981232
Target:  5'- --cCGUCaccacccCCACCAUcCGCC-UCGCCa -3'
miRNA:   3'- gaaGCAGc------GGUGGUA-GCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 401520 0.67 0.97708
Target:  5'- --cCGcCGCCugCAgcuGCCAUCGCgGc -3'
miRNA:   3'- gaaGCaGCGGugGUag-CGGUAGCGgC- -5'
32777 5' -56.8 NC_007346.1 + 198742 0.66 0.987814
Target:  5'- -----cCGCCACCAUCacccccaccaCCAUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGc---------GGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 124770 0.7 0.906869
Target:  5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3'
miRNA:   3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5'
32777 5' -56.8 NC_007346.1 + 198496 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198664 0.68 0.960622
Target:  5'- -----cCGCCACCAUCaCCAcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238898 0.7 0.906869
Target:  5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3'
miRNA:   3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 166043 0.73 0.766448
Target:  5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3'
miRNA:   3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198124 0.73 0.766448
Target:  5'- -----cCGCCACCAUcuccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 126006 0.73 0.766448
Target:  5'- -gUCGUCGUCAUCAUCGUCAUCaUCa -3'
miRNA:   3'- gaAGCAGCGGUGGUAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 238723 0.73 0.759409
Target:  5'- --cCGUCGCCggucgaaggugagccACCGUCGCCAgucgcagaugagCGCCGu -3'
miRNA:   3'- gaaGCAGCGG---------------UGGUAGCGGUa-----------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198199 0.75 0.693724
Target:  5'- -----cCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 316271 0.72 0.816894
Target:  5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3'
miRNA:   3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 61615 0.68 0.945935
Target:  5'- --cCGgCGCCACCucCGCCuUCGCCu -3'
miRNA:   3'- gaaGCaGCGGUGGuaGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 392456 0.68 0.949902
Target:  5'- ---aGUCGCCgaGCCAgucacugaGCCAgUCGCCGa -3'
miRNA:   3'- gaagCAGCGG--UGGUag------CGGU-AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.