miRNA display CGI


Results 81 - 100 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 391071 0.69 0.932821
Target:  5'- uCUUC-UUGgCAUCGUCGUCAUCgGCCGg -3'
miRNA:   3'- -GAAGcAGCgGUGGUAGCGGUAG-CGGC- -5'
32777 5' -56.8 NC_007346.1 + 238774 0.69 0.930933
Target:  5'- --cCGUCaUCGCCGgucgcagaugagcCGCCAUCGCCGg -3'
miRNA:   3'- gaaGCAGcGGUGGUa------------GCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198199 0.75 0.693724
Target:  5'- -----cCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198071 0.76 0.637112
Target:  5'- -aUCGcCGCCGCCAUCGCCAcCaCCa -3'
miRNA:   3'- gaAGCaGCGGUGGUAGCGGUaGcGGc -5'
32777 5' -56.8 NC_007346.1 + 57956 0.76 0.627627
Target:  5'- --cCGUCGCCAaguccgccuCCAUCGCCGccucccUCGCCa -3'
miRNA:   3'- gaaGCAGCGGU---------GGUAGCGGU------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 199275 0.77 0.580364
Target:  5'- -----cCGCCGCCAUCGCCGcCGCCa -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 198236 0.78 0.524743
Target:  5'- -aUCGccacCGCCACCAUCGCCuccaccgccAUCGCCa -3'
miRNA:   3'- gaAGCa---GCGGUGGUAGCGG---------UAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 58498 0.78 0.515658
Target:  5'- cCUUCGUCGCCACC---GCCGUCaCCGa -3'
miRNA:   3'- -GAAGCAGCGGUGGuagCGGUAGcGGC- -5'
32777 5' -56.8 NC_007346.1 + 198328 0.78 0.497684
Target:  5'- -----cCGCCACCAUCGCCAccaUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGU---AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 166010 1.08 0.00878
Target:  5'- cCUUCGUCGCCACCAUCGCCAUCGCCGc -3'
miRNA:   3'- -GAAGCAGCGGUGGUAGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 238723 0.73 0.759409
Target:  5'- --cCGUCGCCggucgaaggugagccACCGUCGCCAgucgcagaugagCGCCGu -3'
miRNA:   3'- gaaGCAGCGG---------------UGGUAGCGGUa-----------GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 126006 0.73 0.766448
Target:  5'- -gUCGUCGUCAUCAUCGUCAUCaUCa -3'
miRNA:   3'- gaAGCAGCGGUGGUAGCGGUAGcGGc -5'
32777 5' -56.8 NC_007346.1 + 60158 0.69 0.92804
Target:  5'- -----cCGCCACCAUCaCCAcCGCCGc -3'
miRNA:   3'- gaagcaGCGGUGGUAGcGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 59257 0.69 0.925074
Target:  5'- -aUCGUuuucuccaccgccauUGCCuCCAUCGCCAUaucCGCCa -3'
miRNA:   3'- gaAGCA---------------GCGGuGGUAGCGGUA---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 198850 0.69 0.923055
Target:  5'- -aUCucCGCCACCAccaccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaAGcaGCGGUGGUa---------GCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 238898 0.7 0.906869
Target:  5'- -aUCGUCGCCcauGCgcUCGCCuUCGCCc -3'
miRNA:   3'- gaAGCAGCGG---UGguAGCGGuAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 124770 0.7 0.906869
Target:  5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3'
miRNA:   3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5'
32777 5' -56.8 NC_007346.1 + 316271 0.72 0.816894
Target:  5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3'
miRNA:   3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 166043 0.73 0.766448
Target:  5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3'
miRNA:   3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 198124 0.73 0.766448
Target:  5'- -----cCGCCACCAUcuccaccacCGCCAUCGCCu -3'
miRNA:   3'- gaagcaGCGGUGGUA---------GCGGUAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.