Results 101 - 105 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 124770 | 0.7 | 0.906869 |
Target: 5'- gUUCGUCGCCA-CAUCGUCGUUuaCa -3' miRNA: 3'- gAAGCAGCGGUgGUAGCGGUAGcgGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 316271 | 0.72 | 0.816894 |
Target: 5'- aCUUUGUCuCCuCCuGUCGCCAUUGCCu -3' miRNA: 3'- -GAAGCAGcGGuGG-UAGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 166043 | 0.73 | 0.766448 |
Target: 5'- -gUUGUUGCU-CCAUCGCCAccaccaUCGCCGc -3' miRNA: 3'- gaAGCAGCGGuGGUAGCGGU------AGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 198124 | 0.73 | 0.766448 |
Target: 5'- -----cCGCCACCAUcuccaccacCGCCAUCGCCu -3' miRNA: 3'- gaagcaGCGGUGGUA---------GCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 166010 | 1.08 | 0.00878 |
Target: 5'- cCUUCGUCGCCACCAUCGCCAUCGCCGc -3' miRNA: 3'- -GAAGCAGCGGUGGUAGCGGUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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