Results 61 - 80 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32777 | 5' | -56.8 | NC_007346.1 | + | 270225 | 0.7 | 0.895068 |
Target: 5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3' miRNA: 3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 309644 | 0.75 | 0.656067 |
Target: 5'- -aUCucCGCCGCCAUCuCCAUCGCCa -3' miRNA: 3'- gaAGcaGCGGUGGUAGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200258 | 0.75 | 0.646595 |
Target: 5'- --cCGUCGCCAUCAcCGCCAUCuCCa -3' miRNA: 3'- gaaGCAGCGGUGGUaGCGGUAGcGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 128286 | 0.76 | 0.637112 |
Target: 5'- --cCGcCGCCACCGcCGCCAcCGCCGc -3' miRNA: 3'- gaaGCaGCGGUGGUaGCGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 187566 | 0.76 | 0.599213 |
Target: 5'- --cCGUCGCC-UCAUcCGCCGUCGCCc -3' miRNA: 3'- gaaGCAGCGGuGGUA-GCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 309277 | 0.77 | 0.561643 |
Target: 5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3' miRNA: 3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 306711 | 0.77 | 0.561643 |
Target: 5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3' miRNA: 3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 187969 | 0.77 | 0.552343 |
Target: 5'- ----aUCGCCGCCucCGCCAUCGCCGc -3' miRNA: 3'- gaagcAGCGGUGGuaGCGGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 349375 | 0.78 | 0.497684 |
Target: 5'- --cCGcCGCCACCGcCGCCGUCGUCGc -3' miRNA: 3'- gaaGCaGCGGUGGUaGCGGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 311204 | 0.75 | 0.665523 |
Target: 5'- -----cCGCCGCCAUCuCCAUCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 181425 | 0.74 | 0.712315 |
Target: 5'- -----cCGCCGCCAUUGCCAcCGCCa -3' miRNA: 3'- gaagcaGCGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127916 | 0.73 | 0.757639 |
Target: 5'- ----aUCGCCACCAcCGCCAUcucCGCCGc -3' miRNA: 3'- gaagcAGCGGUGGUaGCGGUA---GCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 329920 | 0.71 | 0.87855 |
Target: 5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3' miRNA: 3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127806 | 0.71 | 0.875895 |
Target: 5'- --cCGcCaCCACCGUCGCCGcCGCCa -3' miRNA: 3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 189497 | 0.71 | 0.875895 |
Target: 5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3' miRNA: 3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 127862 | 0.71 | 0.869124 |
Target: 5'- ----aUCaCCACCAcCGCCAUCGCCa -3' miRNA: 3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 188377 | 0.71 | 0.869124 |
Target: 5'- ----aUCGCCACCAcCaCCAUCGCCa -3' miRNA: 3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 304708 | 0.71 | 0.85504 |
Target: 5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3' miRNA: 3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 188446 | 0.72 | 0.832628 |
Target: 5'- -aUCGccacCGCCACCAUCaccaccaccaCCAUCGCCGc -3' miRNA: 3'- gaAGCa---GCGGUGGUAGc---------GGUAGCGGC- -5' |
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32777 | 5' | -56.8 | NC_007346.1 | + | 200141 | 0.72 | 0.824836 |
Target: 5'- --cCGcCGCCACCAUcacCGCCAUCauuGCCa -3' miRNA: 3'- gaaGCaGCGGUGGUA---GCGGUAG---CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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