miRNA display CGI


Results 81 - 100 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32777 5' -56.8 NC_007346.1 + 309277 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 306711 0.77 0.561643
Target:  5'- --cCGUCGCCGCCGcCGCCGagccCGCCGc -3'
miRNA:   3'- gaaGCAGCGGUGGUaGCGGUa---GCGGC- -5'
32777 5' -56.8 NC_007346.1 + 187969 0.77 0.552343
Target:  5'- ----aUCGCCGCCucCGCCAUCGCCGc -3'
miRNA:   3'- gaagcAGCGGUGGuaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 349375 0.78 0.497684
Target:  5'- --cCGcCGCCACCGcCGCCGUCGUCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUaGCGGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 304708 0.71 0.85504
Target:  5'- aUUC-UCGCCACCGaCGCUGcCGCCGu -3'
miRNA:   3'- gAAGcAGCGGUGGUaGCGGUaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 188377 0.71 0.869124
Target:  5'- ----aUCGCCACCAcCaCCAUCGCCa -3'
miRNA:   3'- gaagcAGCGGUGGUaGcGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 127862 0.71 0.869124
Target:  5'- ----aUCaCCACCAcCGCCAUCGCCa -3'
miRNA:   3'- gaagcAGcGGUGGUaGCGGUAGCGGc -5'
32777 5' -56.8 NC_007346.1 + 311240 0.69 0.923055
Target:  5'- aUUCcacCGCCACCAUCuCCAcCGCCa -3'
miRNA:   3'- gAAGca-GCGGUGGUAGcGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 200465 0.7 0.906869
Target:  5'- -----cCGCCACCGUUGCCAccaccaccauggUCGCCc -3'
miRNA:   3'- gaagcaGCGGUGGUAGCGGU------------AGCGGc -5'
32777 5' -56.8 NC_007346.1 + 309498 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 308240 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307973 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307700 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307439 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 307167 0.7 0.906869
Target:  5'- --cCGcCGCCACCAUCuccuccaccaCCAUUGCCGc -3'
miRNA:   3'- gaaGCaGCGGUGGUAGc---------GGUAGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 272017 0.7 0.900477
Target:  5'- -gUCGUguaccacCGCCACCAcCGCCAccucCGCCa -3'
miRNA:   3'- gaAGCA-------GCGGUGGUaGCGGUa---GCGGc -5'
32777 5' -56.8 NC_007346.1 + 270225 0.7 0.895068
Target:  5'- --cCGUCaCCGCCGUUGCCAcCGUCa -3'
miRNA:   3'- gaaGCAGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 329920 0.71 0.87855
Target:  5'- -aUCGUCGUCAUCGuccgaaucgggaaguUCGUCcgCGCCGu -3'
miRNA:   3'- gaAGCAGCGGUGGU---------------AGCGGuaGCGGC- -5'
32777 5' -56.8 NC_007346.1 + 127806 0.71 0.875895
Target:  5'- --cCGcCaCCACCGUCGCCGcCGCCa -3'
miRNA:   3'- gaaGCaGcGGUGGUAGCGGUaGCGGc -5'
32777 5' -56.8 NC_007346.1 + 189497 0.71 0.875895
Target:  5'- --cCGUcacCGCCACCAUCaCCGcCGCCGu -3'
miRNA:   3'- gaaGCA---GCGGUGGUAGcGGUaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.